Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq844 212 8e-50 seq410 84.2 3e-11 >seq844 Length=176084 Score = 212 bits (234), Expect = 8e-50 Identities = 425/628 (68%), Gaps = 2/628 (0%) Strand=Plus/Minus Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| |||||||| || ||| ||||| | |||||| | || | |||||| || || || Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || ||||| || || ||||| || || || ||||| |||| || | | | || Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGT 39063 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 39062 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 39003 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 ||||||||| |||| ||| || ||| | || || || || | || | ||| | ||| Sbjct 39002 CGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCAT 38943 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| |||| || | | ||| ||| || ||||||| |||||| |||| ||| Sbjct 38942 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGT 38883 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || || || ||||||| || || |||| ||| |||| || |||||||||| Sbjct 38882 CTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 38823 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCC 63912 || || | | | ||| || || | || | ||| || || || || || || Sbjct 38822 GTCTTTGTTCTCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGT 38764 Query 63913 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 63972 ||||| || || | |||||| | | ||||||||||| || || || | || || | Sbjct 38763 CATTTAAGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCG 38704 Query 63973 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64032 | || ||||| || ||||| ||||| || | || || || ||||| || || || || | Sbjct 38703 TCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCT 38644 Query 64033 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 64092 || || |||||| | || || || ||||| ||||| | || || || || || | Sbjct 38643 TAGTTGTGAGAGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGC 38584 Query 64093 CATTATATATTCCTTGAATAACCTTCAT 64120 | | || | || || || |||||||| Sbjct 38583 CGCTGTACAAACCCTGGATCACCTTCAT 38556 >seq410 Length=233677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 227048 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 226989 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 226988 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 226929 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || || ||| | || | || || || |||||||| Sbjct 226928 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622823607275520