Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8270 122 6e-23 seq2134 118 7e-22 seq13 104 2e-17 seq1724 95.1 8e-15 seq3039 93.3 3e-14 seq4530 91.5 1e-13 seq4426 89.7 3e-13 seq4281 89.7 3e-13 seq589 89.7 3e-13 >seq8270 Length=14622 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 5210 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATAGCAAAAACG 5269 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 5270 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 5329 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 5330 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 5381 >seq2134 Length=105644 Score = 118 bits (130), Expect = 7e-22 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 12932 AGCCCGTTCCCTTGGCTGTGGTTTCRCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTT 12873 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||| |||||||||||||| Sbjct 12872 CATCCATTCATGCGCGTCTTTAATTAGATGACGA 12839 >seq13 Length=750399 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 134983 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCCAGTAGGGACAGTGGGAATCTCGT 134924 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||| |||||||||||||||||| || Sbjct 134923 TCAACCATTCATGTGCGTCACTAATTAGATGAAGA 134889 >seq1724 Length=117319 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 28825 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 28884 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 28885 GCCGGTATTTAGCCTTA 28901 >seq3039 Length=76524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 33338 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 33279 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 33278 SCYGGTATTTAGCCTTA 33262 >seq4530 Length=50951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 14242 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCRACTATCGGTCTCGT 14183 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| || Sbjct 14182 GCCGGTATTTAGCCTAAT 14165 >seq4426 Length=46072 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||| Sbjct 15605 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAGGGTACTTGTTGACTATCGGGCTCAT 15664 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 15665 GCCGGTATTTAGCCTTA 15681 >seq4281 Length=56529 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 41779 CTCTCTCTTCACAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 41720 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 41719 GCCGGTATTTAGCCTTA 41703 >seq589 Length=216745 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||| | Sbjct 34130 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTGGT 34071 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 34070 GCCGGTATTTAGCCTTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334882407813632