Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq170 172 1e-37 seq9656 109 1e-18 seq11498 84.2 4e-11 >seq170 Length=344817 Score = 172 bits (190), Expect = 1e-37 Identities = 166/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 171517 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 171576 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 171577 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 171636 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| || || ||| ||| |||||||| ||| | ||| || |||| ||||||||| || Sbjct 171637 TCTTGGCTTTCACGTTCTCAATGGTGTC-GCTGGGTTCAACCTCCAGGGTGATGGTCTTG 171695 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 171696 CCAGTGAGGGTCTTAACGAAGATCTGCAT 171724 Score = 161 bits (178), Expect = 2e-34 Identities = 163/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||| |||||||| || |||||||| || | |||||||| | Sbjct 171745 CAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCA 171804 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || ||||| || ||||||||||||||||| || | Sbjct 171805 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 171864 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| ||| | || || || | |||||||| || Sbjct 171865 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCAAGAGTGATGGTCTTG 171923 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 171924 CCAGTGAGGGTCTTCACAAAGATCTGCAT 171952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/111 (81%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTC 68410 ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| | || Sbjct 179389 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTC 179447 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||||||||| || || ||||||||||| || || |||||||| Sbjct 179448 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 179498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68223 TGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATG 68282 ||| |||| | || || | || |||| || | || || || || ||||| |||||| Sbjct 176479 TGACTTTACTGGCCGCCCCTCAGACGCAGCACAAGATGGAGGGTAGATTCTTTCTGGATG 176538 Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || || || ||||| || | |||||||| | |||||| ||||| || || || || || Sbjct 176539 TTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGC 176598 Query 68343 TGGTCGGGTGGAATGCCTTC 68362 ||||| || ||||||||||| Sbjct 176599 TGGTCTGGGGGAATGCCTTC 176618 >seq9656 Length=12402 Score = 109 bits (120), Expect = 1e-18 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | |||||| | || || | || | || || |||||||| || |||||||| | Sbjct 170 TTTACTGTCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 111 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||||||| || | || ||||| | |||||| || || || || || | || || | Sbjct 110 AGTCGGAGAGGGTGCGRCCRTCTTCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRT 51 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 | || || ||||||||||| || || ||||| ||||||||| Sbjct 50 CTGGRGGRATGCCTTCCTTATCCTGGATCTTGGCCTTGACG 10 >seq11498 Length=8624 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| | |||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 6304 ACCTCCTCTGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6363 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 6364 TACTGGATGGGGAA 6377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921439550115840