Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq170 107 2e-18 >seq170 Length=344817 Score = 107 bits (118), Expect = 2e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| | || ||| |||||| || || || ||| Sbjct 171756 GTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCA 171815 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 171816 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 171875 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||||| || | || | || ||||| || || || Sbjct 171876 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTC 171935 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 171936 TTCACAAAGATCTGCATG 171953 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| | || | || || | ||| | || || || || || |||||||| ||| Sbjct 171497 ACCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 171556 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || ||||| |||| || | ||| || || || || Sbjct 171557 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 171616 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||||||| ||||| ||||| ||| | | |||| ||||||| ||| ||| || Sbjct 171617 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 171676 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| | || ||||| || || || || || || ||||||||| Sbjct 171677 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 171725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420053129201664