Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq410 113 9e-20 seq844 100 5e-16 seq11498 96.9 7e-15 seq10286 96.9 7e-15 seq954 87.8 3e-12 >seq410 Length=233677 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 231110 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 231051 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 231050 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 230991 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 230990 CTGTTCCTCACACCATGCCT 230971 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 230145 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGG 230086 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||| ||| |||||||||||| |||||||||||| | ||| ||||| ||| Sbjct 230085 TTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCG 230032 >seq844 Length=176084 Score = 100 bits (110), Expect = 5e-16 Identities = 247/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 |||||||| ||||||| ||| | |||| | ||| || | || || | ||| Sbjct 39232 TTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCC 39173 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 ||||| ||||||||||||||||| ||| | ||||| ||||| || |||||| Sbjct 39172 CCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTG 39113 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 || |||||| |||||| |||||| ||||||||| ||| || | | | | |||| Sbjct 39112 TCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTG 39053 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAG 245469 || || |||||| ||||||||| || | | ||| || || | |||||||| | Sbjct 39052 AAGAGCGTGGGGGAGGCGTGGGTGAACCA-CTTCTCTGACAGCAGGTTGTACGTCTCAAT 38994 Query 245470 CAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGG 245528 |||||||||| ||||||| | || ||| |||||||| ||||||| | Sbjct 38993 GGCTGCGTCGATGTCCATCTTGTGGATCCCGACGG-ACACTCTCATGAGCATGTGCTGCG 38935 Query 245529 GCGTCTCGATGGGTCCCT----CGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTG 245584 | ||| | || | || || ||| | || |||||| ||||| || |||||| Sbjct 38934 G----TCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTG 38879 Query 245585 AACCCAAAG 245593 || || ||| Sbjct 38878 AAGCCGAAG 38870 >seq11498 Length=8624 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 2738 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 2679 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 2678 CGTGGGCGAGTACCAG 2663 >seq10286 Length=7128 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 511 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 570 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 571 CGTGGGCGAGTACCAG 586 >seq954 Length=166441 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||||||||||||||| ||| | ||||| ||||||| ||| Sbjct 95940 GTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGG 95999 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| ||| ||| | ||||| || || |||| ||| ||||| || || || |||| Sbjct 96000 CTCAAGAAGAGAGGACT-AATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGA 96058 Query 42827 CGAGG 42831 |||| Sbjct 96059 TGAGG 96063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944151843102720