Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq170 136 9e-27 seq9656 96.9 8e-15 >seq170 Length=344817 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 171513 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 171572 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| ||| |||||| || ||||| || Sbjct 171573 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTG 171629 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || ||||||||||| || || | ||||| | ||| || || || ||||| Sbjct 171630 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATG 171689 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| ||||| |||||||| Sbjct 171690 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 171724 >seq9656 Length=12402 Score = 96.9 bits (106), Expect = 8e-15 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || | ||| | || || ||||| | ||| || || ||||| || |||||| Sbjct 165 TGTCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 106 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || ||||| | || || || || |||||||| | ||| || ||| Sbjct 105 GAGAGGGTGCGRCCRTCTTCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGR---TCT 49 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 || || ||||| ||||||||||| || || || |||||||| || Sbjct 48 GGRGGRATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179414505481216