Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7384 95.1 1e-14 seq4066 87.8 2e-12 seq213 87.8 2e-12 seq5594 82.4 8e-11 >seq7384 Length=24330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 6227 AAAAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 6168 Query 57058 TCACCACTATACTACCGAGGATTGAATATATA 57089 | ||||||||||| |||||| | ||||||| Sbjct 6167 TGTCCACTATACTAACGAGGAAGGGATATATA 6136 >seq4066 Length=58658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 1496 AAAAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 1437 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 1436 TGTCCACTATACTAACGAGGA 1416 >seq213 Length=299168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || || | |||||||||| |||||||||||||| |||| || |||||||||| Sbjct 7791 TTACTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGAAAGGC-GAAATACTCACCA 7733 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 7732 CTATACTAACGAGGA 7718 >seq5594 Length=38127 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 23898 AAAAAATACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 23839 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 23838 GTCCACTATACTAACGAGGA 23819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||| Sbjct 27051 GAAAAATA--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 26994 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||| |||||| Sbjct 26993 CTGTCCACTATACTAACGAGGA 26972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543105026580480