Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq170 118 1e-21 seq9656 91.5 1e-13 >seq170 Length=344817 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| || |||||||| || | || |||||| | ||| Sbjct 171741 AGGACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 171800 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 171801 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 171860 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || || || || | ||| | |||| Sbjct 171861 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTC 171920 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | || || || || || ||||| || Sbjct 171921 TTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 171955 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | ||||| ||||| | || || || || || |||||||| || | Sbjct 171497 ACCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 171556 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| ||| | || |||| |||||| || || || Sbjct 171557 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 171616 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || || || | | || ||||| || ||| | || || | || || | Sbjct 171617 AATGCCTTCCTTGTCCTGGA-TCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAA 171675 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| || | || || ||||| || ||||| Sbjct 171676 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 171724 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || |||||||| || |||||||| || | || |||||| | ||| Sbjct 176506 AGCACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 176565 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 || ||||||||||||||| | || |||| ||||||||| || ||||| ||||| Sbjct 176566 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTC 176618 >seq9656 Length=12402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 147 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGRCCRTCT 88 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || || | |||||| || || || || ||||| || || Sbjct 87 TCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRTCTGGRGGRATGCCTTCCTTATCC 28 Query 64352 TGTATTTT 64359 || || || Sbjct 27 TGGATCTT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499545670471680