Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq410 96.9 3e-15 seq170 84.2 2e-11 >seq410 Length=233677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || |||||| | || ||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 230015 ATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAAGACGCCTGCAAC 230074 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| || || |||| || || |||| || ||||| ||| | || || Sbjct 230075 AGGAAGAGCAACCARCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATC 230134 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 230135 GTAGAGTACA 230144 >seq170 Length=344817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| || ||||| || || ||| || ||| | ||| ||| Sbjct 171744 ACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 171803 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| | |||||||| || ||||||||||| || || || Sbjct 171804 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 171863 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | ||||||| | |||||| || ||||| | || || Sbjct 171864 ATCTTGGCCTTCA-CGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTT 171922 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || ||||| || ||||| Sbjct 171923 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 171952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451913522565120