Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2751 116 5e-21 seq2358 111 2e-19 seq4015 100 4e-16 >seq2751 Length=74470 Score = 116 bits (128), Expect = 5e-21 Identities = 202/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || ||||| || || | | | | || ||||||| | | Sbjct 40801 CCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCCGTCAC 40742 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| |||||| | || || |||| || |||| || | ||| | ||| Sbjct 40741 CACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGGAAAGT 40682 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||||| || || |||||||| Sbjct 40681 ATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGGTTCTG 40622 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| || Sbjct 40621 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTATAG 40564 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 40563 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 40514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 9753 CTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCT 9812 |||||| |||| |||||||| | || | || || || |||| ||||||||||| Sbjct 39921 CTCGTCGTCCCAGTCCGGGTGGACCGCCTTCAACACGTCACACACCCGGTTGTGTTCTCG 39862 Query 9813 CAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCAC 9872 ||||| ||||||||||||||||| | || || || | || ||| | || | ||||| Sbjct 39861 TAGCCAGATGGTGGCGTACATCATCAGGCCGGGGACCAGGCCGAACGCCTCGTGGCCCAC 39802 Query 9873 TGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTT 9932 || ||||| || ||||| || | || | || |||| | || ||| || Sbjct 39801 AGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGGTAGTGCATGTCAACGCCCACCTCCTT 39742 Query 9933 GACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || |||||||||| || || || | |||||| Sbjct 39741 TACTGTTGGGGGATACACCTCTCCATCCAGAACCTG 39706 >seq2358 Length=92096 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || ||||| ||||| | || || || || || ||||||||||| ||||||||| Sbjct 46313 GTGGCAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAC 46372 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| Sbjct 46373 TCAGGGGAGCAGATGGGGTTTGCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCC 46432 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | || |||||||| ||||| || || || | |||||| | | | ||| | ||| Sbjct 46433 ACCATACTCTCACCAAAGATACCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAA 46492 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || | ||| || | ||| || ||||| Sbjct 46493 AACTCCAAAGCATCTATGTCACCGTAGAG 46521 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || || || || || ||||||||||| ||||||||| | ||| Sbjct 60524 GTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGG 60583 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||||||||| ||| ||| || || |||| ||| || ||||| |||| ||| | || Sbjct 60584 GAGCAGATGGGGTTTCCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATA 60643 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || | |||||| | ||| || | | || ||| | ||||| || Sbjct 60644 CTCTCACCAAACAGTCTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCC 60703 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| || ||||| Sbjct 60704 AAAGCATCTATGTCACCGTAGAG 60726 >seq4015 Length=56382 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || | |||||| ||||| || || || | || || ||||||||||| |||||||| Sbjct 12924 GTGGCAGATTTCACTATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAA 12983 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| ||| ||||| | || || || || |||| ||| Sbjct 12984 TCTGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGAGAGAAGGGGGCGCCCATCTCT 13043 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 || |||||||| || || ||||| || | || | | || | | || |||| ||| Sbjct 13044 ATCATGCTCTCTCCAAATATGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAA 13103 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | ||| ||||| || | ||| || |||| | || | |||| |||||||||| Sbjct 13104 AATTCAACAGCATCAATGTCACCGTAGAATTCCTCAAGCTCGCGGGCTATCTCCT 13158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723584412364800