Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq170 152 5e-32 seq11498 105 7e-18 seq2403 102 8e-17 seq9656 91.5 1e-13 seq954 87.8 2e-12 >seq170 Length=344817 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 171724 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 171665 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || |||||| | || || Sbjct 171664 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 171606 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 171605 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 171546 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | ||||||||| |||| ||||| Sbjct 171545 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGG 171498 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| |||||||| | || |||||| | Sbjct 171956 AAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCC 171897 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | || |||| ||||| || || |||||| | | Sbjct 171896 CAGCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 171838 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 171837 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACT 171778 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || ||| | || || ||| | || |||||| |||| || ||| Sbjct 171777 ACAACATCCAGAAAGAATCYACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 171725 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || |||||| | ||||| ||| |||| || | || ||||| |||||||| || | Sbjct 176618 GAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGT 176559 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||||||| |||||||||||||| || ||| | || || ||| | ||||||||| || Sbjct 176558 CGCACCCTCTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGTGCTGCGTCTG 176499 Query 38463 AGAGGCGGCC 38472 || ||||||| Sbjct 176498 AGGGGCGGCC 176489 >seq11498 Length=8624 Score = 105 bits (116), Expect = 7e-18 Identities = 102/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || |||||||||||||||||||||||||| || || |||| |||||| Sbjct 5990 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAACGCCAACACGTGAG 6048 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCA-AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 |||||| | | ||||| ||| |||| || | ||||||| || |||||||||||| Sbjct 6049 AGATGAAGTACCTCTCGTCGTCCTTCAGAGAG-TCCCAGTTCTGCAGGTCCTTGGACAGA 6107 Query 133393 TCCACCT 133399 ||||||| Sbjct 6108 TCCACCT 6114 >seq2403 Length=96071 Score = 102 bits (112), Expect = 8e-17 Identities = 101/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || |||||||||||||||||||||||||| || || |||| |||||| Sbjct 94954 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAACGCCAACACGTGAG 94896 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCA-AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 |||||| | ||||| ||| |||| || | ||||||| || |||||||||||| Sbjct 94895 AGATGAAGAACCTCTCGTCGTCCTTCAGAGAG-TCCCAGTGCTGCAGGTCCTTGGACAGA 94837 Query 133393 TCCACCT 133399 ||||||| Sbjct 94836 TCCACCT 94830 >seq9656 Length=12402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/143 (72%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || || || || || | || || ||| | || || | || || || Sbjct 20 AAGATCCAGGATAAGGAAGGCATYCCYCCAGAYCAGCAGMGKCTGATCTTTGCTGGMAAG 79 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| ||||||||||||||| ||||| | || || ||| Sbjct 80 CAGCTGGAAGAYGGYCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAT 139 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||| | ||||| || Sbjct 140 CTTGTGCTCCGTCTCAGAGGAGG 162 >seq954 Length=166441 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||| ||| || |||||| | | || | ||| ||||| || || | || | Sbjct 96063 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 96004 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 |||||||||| ||||| ||||| ||| || ||||||| |||||| || ||||| |||| Sbjct 96003 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 95944 Query 133037 CCACCAGGCGCTCGCC 133052 |||| | ||||| || Sbjct 95943 CCACAATTCGCTCCCC 95928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500073565716480