Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq80 98.7 1e-15 seq3702 93.3 5e-14 seq3596 93.3 5e-14 seq3346 93.3 5e-14 seq1198 93.3 5e-14 seq570 93.3 5e-14 seq383 93.3 5e-14 seq55 93.3 5e-14 seq410 91.5 2e-13 seq9978 86.0 7e-12 seq954 86.0 7e-12 >seq80 Length=463091 Score = 98.7 bits (108), Expect = 1e-15 Identities = 76/87 (87%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 148322 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 148381 Query 136776 -TGGGAACAGCTTTT-AG-ATATATTT 136799 ||| || |||||| || ||| |||| Sbjct 148382 CTGGCCACTGCTTTTGAGAATAGATTT 148408 >seq3702 Length=66898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 41171 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 41113 >seq3596 Length=63588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 11851 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 11793 >seq3346 Length=82013 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 42945 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 42887 >seq1198 Length=141946 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 128243 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 128301 >seq570 Length=207371 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 16263 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 16321 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 18681 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGT 18739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 17005 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 17063 >seq383 Length=268623 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 92320 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 92378 >seq55 Length=507657 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 160034 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGACCCCCGT 159976 >seq410 Length=233677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | || | |||| |||||||| ||||| ||||| ||||| Sbjct 231078 GTAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGA 231019 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||||||| |||| ||| |||||||| Sbjct 231018 AGCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 230986 >seq9978 Length=8672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct 7534 TAGCTCAGATGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCGATCCCC 7590 >seq954 Length=166441 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||||||| || ||||| || | || ||| |||||||| |||||||| ||||| Sbjct 96061 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 96002 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 ||||||||||||||| || || || ||||||||||||||||| Sbjct 96001 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCAC 95955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588859147161600