Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq170 109 4e-19 >seq170 Length=344817 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 171761 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 171820 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| || ||| Sbjct 171821 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 171880 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || ||| || || | || ||||| || || ||||| |||||||| Sbjct 171881 CTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCAC 171940 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 171941 AAAGATCTGCATGTT 171955 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 171534 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 171593 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| ||||| ||| ||| Sbjct 171594 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTC 171653 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||||| || | ||| ||||| || || ||||| ||||| || Sbjct 171654 TCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 171713 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 171714 AAGATCTGCAT 171724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324570802876416