Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1148 113 4e-19 seq10238 105 5e-17 seq5956 105 5e-17 seq4009 104 2e-16 >seq1148 Length=142681 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || |||||||| || || || || |||||||||| Sbjct 23839 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 23898 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||||| ||||| ||||||||||| || |||||||| Sbjct 23899 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 23958 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 23959 TCGCCTATGGGCTGGACAAA 23978 >seq10238 Length=7559 Score = 105 bits (116), Expect = 5e-17 Identities = 432/675 (64%), Gaps = 6/675 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || |||||||| ||||| || | | || || || | || || ||| |||| | Sbjct 5273 ACGGCTTGCGAGAGAGCGAAGAGGACCCTGTCCTCCAGCACCCAGGCCAGCCTTGAGATC 5332 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | || ||||| || || | | || | || ||||||| ||||| || Sbjct 5333 GACTCTCTGTTCGAGGGCATCGACTTCTACACCTCCATCACGAGGGCACGCTTTGAGGAG 5392 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT--TTTAAGAGATT 552090 | | | || ||||| || |||| | || ||||| || |||| || || || Sbjct 5393 CTCAATGCAGAGCTCTTCAGGGGAACACTGGAGCCAGTCGAG-AAGTCCTTGCAG-GACG 5450 Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150 | ||| | || || ||||| | ||||| ||||| || || || || || |||||||| | Sbjct 5451 CCAAGCTGGACAAGTCCAAGATCCATGAGATTGTCCTGGTCGGCGGCTCCACAAGAATCC 5510 Query 552151 CTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209 | ||||| | | | || || | | ||| || || | | || | || | || || Sbjct 5511 CCAAAATCCAGAAGCTCTTGCAGGACCTTTTT-AACGGCAGAGAACTGAACAAGAGCATT 5569 Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||| ||||| || || ||||| || | || || || || || || | Sbjct 5570 AACCCAGATGAAGCTGTGGCGTACGGTGCAGCGGTCCAGGCTGCCATCCTCATGGGCGAC 5629 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 ||| || || | || || | | || | || || |||| || ||||| || | Sbjct 5630 ACTTCAGAGAACGTCCAGGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATC 5689 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 || || || || || ||||||| ||| ||| | |||| || || || || | || Sbjct 5690 GAGACCGTAGGCGGAGTTATGACACCTCTAATCAAACGAAACACCACCATCCCCTCCAAG 5749 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 | | | | || || |||||||| || ||||| | | ||| ||||| | | Sbjct 5750 CAGACCCAGATCTTCTCCACGTATTCGGACAATCAGCCAGGTGTGCTGATTCAGGTGTAC 5809 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 || ||||| ||| | || || || || || | | || | ||| | | | |||| Sbjct 5810 GAGGGAGAGAGAGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTTGCAGGT 5869 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 || ||||||||||| || || ||||| || | || || || ||||| ||||| ||||| Sbjct 5870 ATCCCTCCTGCTCCCCGAGGCGTACCACAGGTGGAGGTCACCTTCGACATCGACGCCAAC 5929 Query 552570 GGAATTTTGAATGTG 552584 || ||| |||| ||| Sbjct 5930 GGCATTCTGAACGTG 5944 >seq5956 Length=30114 Score = 105 bits (116), Expect = 5e-17 Identities = 432/675 (64%), Gaps = 6/675 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || |||||||| ||||| || | | || || || | || || ||| |||| | Sbjct 678 ACGGCTTGCGAGAGAGCGAAGAGGACCCTGTCCTCCAGCACCCAGGCCAGCCTTGAGATC 619 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | || ||||| || || | | || | || ||||||| ||||| || Sbjct 618 GACTCTCTGTTCGAGGGCATCGACTTCTACACCTCCATCACGAGGGCACGCTTTGAGGAG 559 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT--TTTAAGAGATT 552090 | | | || ||||| || |||| | || ||||| || |||| || || || Sbjct 558 CTCAATGCAGAGCTCTTCAGGGGAACACTGGAGCCAGTCGAG-AAGTCCTTGCAG-GACG 501 Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150 | ||| | || || ||||| | ||||| ||||| || || || || || |||||||| | Sbjct 500 CCAAGCTGGACAAGTCCAAGATCCATGAGATTGTCCTGGTCGGCGGCTCCACAAGAATCC 441 Query 552151 CTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209 | ||||| | | | || || | | ||| || || | | || | || | || || Sbjct 440 CCAAAATCCAGAAGCTCTTGCAGGACCTTTTT-AACGGCAGAGAACTGAACAAGAGCATT 382 Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||| ||||| || || ||||| || | || || || || || || | Sbjct 381 AACCCAGATGAAGCTGTGGCGTACGGTGCAGCGGTCCAGGCTGCCATCCTCATGGGCGAC 322 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 ||| || || | || || | | || | || || |||| || ||||| || | Sbjct 321 ACTTCAGAGAACGTCCAGGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATC 262 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 || || || || || ||||||| ||| ||| | |||| || || || || | || Sbjct 261 GAGACCGTAGGCGGAGTTATGACACCTCTAATCAAACGAAACACCACCATCCCCTCCAAG 202 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 | | | | || || |||||||| || ||||| | | ||| ||||| | | Sbjct 201 CAGACCCAGATCTTCTCCACGTATTCGGACAATCAGCCAGGTGTGCTGATTCAGGTGTAC 142 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 || ||||| ||| | || || || || || | | || | ||| | | | |||| Sbjct 141 GAGGGAGAGAGAGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTTGCAGGT 82 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 || ||||||||||| || || ||||| || | || || || ||||| ||||| ||||| Sbjct 81 ATCCCTCCTGCTCCCCGAGGCGTACCACAGGTGGAGGTCACCTTCGACATCGACGCCAAC 22 Query 552570 GGAATTTTGAATGTG 552584 || ||| |||| ||| Sbjct 21 GGCATTCTGAACGTG 7 >seq4009 Length=51947 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 2578 ATGCAGTCGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 2637 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct 2638 CAGGCACCATTTCTGGGCTTAATGTCCTTCGTATCATCAACGAGCCGACTGCTGCTGCTA 2697 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || |||||| Sbjct 2698 TCGCGTACGGCCTGGATAAA 2717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028456617057280