Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1998 136 3e-27 seq1408 116 3e-21 >seq1998 Length=115458 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 72338 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 72279 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 72278 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 72219 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 72218 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 72164 >seq1408 Length=140839 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 || ||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 14868 TCTCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 14927 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 14928 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 14969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||||||||||||||||| | ||| |||| | | ||||| || ||||| ||| ||| Sbjct 7390 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCRCACTCAA 7449 Query 111920 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 111978 | ||| || | | ||||| ||||| ||| | |||||| |||||||||| | |||| Sbjct 7450 ACTGCTTCAGGATTCGCGTGACGAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTCC 7508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 112275 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACCGTT 112334 ||| ||||| | ||| || ||||||||||||| ||| |||||||| ||||||||| |||| Sbjct 18925 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 18984 Query 112335 CAGAATGAGGG 112345 ||||||| ||| Sbjct 18985 CAGAATGCGGG 18995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408538557011456