Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2402 196 9e-45 seq3615 185 2e-41 seq844 136 7e-27 seq7234 122 2e-22 seq1022 116 7e-21 seq954 107 4e-18 seq410 102 2e-16 seq5288 95.1 2e-14 seq2213 93.3 8e-14 seq11498 91.5 3e-13 seq10286 91.5 3e-13 seq526 91.5 3e-13 >seq2402 Length=90197 Score = 196 bits (216), Expect = 9e-45 Identities = 185/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 241391 TGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGC 241450 |||||||| || || ||| |||||||| ||||||||| || || ||||||||||| Sbjct 6924 TGACAGCCGCTGCTCACGTGTGTCAGGACCTTCTGTTTGAGCTGAGCGACCTGGTCCCGG 6983 Query 241451 AGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCC 241510 || || || || || ||||| || || ||||||| || ||| ||||||| || ||| Sbjct 6984 AGCACCGAGGCCGTGTTGGAGAGCCCCACGTTGTCGTTTTTCAGCCCCTTCACCTTGTCC 7043 Query 241511 TCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTC 241570 |||||||| |||||||| ||||| ||||||| |||||||| || ||||||| |||||| Sbjct 7044 TCCAGCCGGGCGATGCGCTCCAGCTTGCGCCTCCGGCATTTAGTCGCTGCCAGCCGGTTC 7103 Query 241571 CGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || ||||| | |||||||||||||| ||||| | |||| || ||| |||||| Sbjct 7104 CTCAGCCTCTTCCTCTCCGCCTTGATGCGCTCCTGATTYTCCAAGTTGATGGGAGAC 7160 >seq3615 Length=61461 Score = 185 bits (204), Expect = 2e-41 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 241403 CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCG 241462 |||||||| || ||| | |||||||||||| |||||||| |||||||| || ||||| Sbjct 7712 CACATGTGTCAT--GACTTTCTGTTTGAGTTGTGCCACCTGATCCCGCAGCACTGACGCC 7769 Query 241463 GTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCG 241522 || ||||||||||| |||||||| | ||| ||||| ||||| || |||||||| || | Sbjct 7770 GTGTTGGACAGTCCCGCGTTGTCTGTCTTCAGCACTTTCACCTTGTCCTCCAGGCGAGAA 7829 Query 241523 ATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTA 241582 ||||| ||||| ||||||| || || |||| ||||| | ||||||| || | ||| Sbjct 7830 ATGCGCTCCAGCTTGCGCCTCCGACACTTGGACGCTGCGAGCCGGTTCCTCAGCCGCTTG 7889 Query 241583 CGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGGT 241633 || |||| || ||||| ||||||| ||||| ||||| || ||| | ||| Sbjct 7890 CGCTCCGTTTTCATGCGGTCCTGGTTCTCCAGATCGATGGGGGACATCGGT 7940 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 ||||||||||||| |||||| | |||||||| || ||||| || |||||||| ||||||| Sbjct 7729 TCTGTTTGAGTTGTGCCACCTGATCCCGCAGCACTGACGCCGTGTTGGACAGTCCCGCGT 7788 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||| |||| || |||||||| || | ||||| |||||||| Sbjct 7789 TGTCTGTCTTCAGCACTTTCACCTTGTCCTCCAGGCGAGAAATGCGCTCCAGCTT 7843 >seq844 Length=176084 Score = 136 bits (150), Expect = 7e-27 Identities = 228/326 (70%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 214089 CCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCG 214148 || || || ||||| | |||||||| | |||||| || ||| || || ||||| Sbjct 39181 CCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCT 39122 Query 214149 GCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG 214208 | |||||||| ||| | | | |||| ||||||||| || ||||| |||||| | Sbjct 39121 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTT 39062 Query 214209 CCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAG 214268 || | |||||| ||||||||| ||| ||| | | |||| | || || || |||| Sbjct 39061 CCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAC 39002 Query 214269 GTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCAT 214327 ||||| | | ||| | |||||| |||||||||| | | ||| ||||| ||||| Sbjct 39001 GTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGA-CACTCTCATGAGCAT 38943 Query 214328 GTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCCAG 214384 |||||| || | ||| || ||||| | ||| | ||||||||| |||||||| Sbjct 38942 GTGCTGCGGTCGCTC---GGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAG 38886 Query 214385 AGTCTTGAACCCAAAGTAGGAGTAGG 214410 ||||||||| || ||| || ||||| Sbjct 38885 AGTCTTGAAGCCGAAGAAGTTGTAGG 38860 >seq7234 Length=20397 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACA- 241472 || ||||| ||||||||| || | ||||| |||||||| | || ||||| || || Sbjct 6910 CATGACCTTCTGTTTGAGCTGCGTGACCTGCTCCCGCAGCATGGCGGCGGTGGAGGCCAA 6851 Query 241473 GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 |||| | ||| | ||| || || ||||| ||||||||||||| || ||| || |||| Sbjct 6850 GTCC-GAGTTCTGGTTCTTCAGAACTTTCACCTTCTCCTCCAGCCTCGAGATCCGCTCCA 6792 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | || ||| |||||| |||| || || | |||||| ||||| |||| || || | | Sbjct 6791 GCTTCCGCTTGCGGCACTTGGACGCGGCGATGCGGTTGCGGAGCTTCTTGCGCTCTACTT 6732 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 |||| || ||||| ||||||||| || || || Sbjct 6731 TGATTCGCTCCTGCGTCTCCATGTCTATTGGGGA 6698 >seq1022 Length=145552 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCT 241477 |||| ||| || || || |||||||| || |||| | | || || | || | Sbjct 112477 ACCTTCTGCTTCAGCTGAGCCACCTGTTCACGCAACATGTTTGCTGTGGATGCAAGCTCC 112536 Query 241478 GCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTG 241537 | ||| | ||||| || ||||||||| |||||||||| | ||| || ||||| || Sbjct 112537 GAGTTCTGCGACTTCAGGTTCTTCACTTTATCCTCCAGCCTGGAGATACGCTCCAGCTTC 112596 Query 241538 CGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATG 241597 | ||||| |||| |||||| | |||||||| | | ||| | |||||||||||| Sbjct 112597 CTTTTCCGGCACTTGGAGGCTGCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATG 112656 Query 241598 CGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || ||||||| |||||||||||||||||| Sbjct 112657 CGCTCCTGGTTCTCCATGTCGATCGGAGA 112685 >seq954 Length=166441 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || ||||| || || ||| |||||||| || || |||||||| | || |||| ||| Sbjct 96061 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 96002 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || ||||| ||||| |||||||||||||||||||||||||| || || Sbjct 96001 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAGC 95943 >seq410 Length=233677 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || ||||||||||| | ||| | ||| ||||| | ||| ||| Sbjct 231108 CTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATGGA 231049 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| |||||||| ||| |||||||||||||| |||| || ||||| Sbjct 231048 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGACT 230989 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 230988 GTTCCTCACACCATGC 230973 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||| | |||||| |||||||| |||||| || |||||||||||| ||||| || Sbjct 230146 TGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTG 230087 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||| |||| | || |||||||||||||| || | ||||| || Sbjct 230086 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTC 230033 >seq5288 Length=38876 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTATTGGACA 241472 ||||| | |||||| || || ||||||||||||||||| | ||| || || | || Sbjct 14263 AGGACTTTCTGTTTCAGCTGAGCCACCTGGTCCCGCAGCA--GACTGGCCGTGGACGCCA 14320 Query 241473 GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 | | | ||||| ||| || ||| || || |||||||||| | |||||| |||| Sbjct 14321 GGTCCGTGTTGTGGCTCTTCAGAGACTTGACCTTGTCCTCCAGCCTGGAGATGCGCTCCA 14380 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 |||||||| || || |||| ||||| | ||||||| ||| ||||| | || || | Sbjct 14381 GTTTGCGCATCCGACACTTGGATGCTGCGATCCGGTTCCTGAGCCTCTTCCTCTCGGCTT 14440 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || ||||| || |||||||| || ||| Sbjct 14441 TCATTGACTCCTGACAGTCAATGTCGATGGGGGAC 14475 >seq2213 Length=102523 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| ||||| | |||| || ||||||||| ||| |||| | ||| Sbjct 6253 CATGACCTTCTGCTTGAGCAGCGCCAGCTCGTCCCGCAGCACGTTGGCGGAAGACACCAG 6194 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | |||||| |||||| ||||||||||||| ||| | ||||| Sbjct 6193 CTCCGTGTTTTGGTTCTTGAGGTTCTTCACCCGGTCCTCCAGCCGCGAGATCCTCTCCAG 6134 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | ||||| |||| || |||| ||||||| | | ||| | |||||||| Sbjct 6133 CTTCCTCTTCCGGCACTTGGACGCGGCCACCCGGTTCCTCATGCGCTTCCTCTCCGCCTT 6074 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| ||||| |||||||| ||| || ||| Sbjct 6073 GATGCGCTCCTGCCTCTCCATGTTGATGGGGGAC 6040 >seq11498 Length=8624 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| ||||||| ||||||||||| Sbjct 2663 CTGGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTC 2722 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| ||||||||| Sbjct 2723 CATGAAGTCGAAGGGGTT 2740 >seq10286 Length=7128 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| ||||||| ||||||||||| Sbjct 586 CTGGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTC 527 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| ||||||||| Sbjct 526 CATGAAGTCGAAGGGGTT 509 >seq526 Length=228782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||| || || ||||||||||| | ||| | ||||| || | | |||||| |||| || Sbjct 49968 CTTGACCTTGTCCTCCAGCCGAGAGATCCTCTCCAGCTTTCTCTTGCGGCACTTGGACGC 50027 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | ||||| || || | || | |||||||||||||| ||||||| |||||||| Sbjct 50028 GGCTATCCGGTTGCGCAGCTTTTTCCTCTCCGCCTTGATGCGCTCCTGGTTGTCCATGTC 50087 Query 241618 GATCGGAGAC 241627 ||| |||||| Sbjct 50088 GATGGGAGAC 50097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931347983892480