Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq954 91.5 3e-13 seq410 91.5 3e-13 >seq954 Length=166441 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||| || |||||||||||||| ||| ||| || || || Sbjct 95928 GGGGAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 95987 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||| ||||||||| || || |||| ||||| || || || ||||||||||| Sbjct 95988 GCCATCTTTTGGCTCAAGAAG-AGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 96046 Query 25992 CATCAGCAGGGACGAGG 26008 || || |||| |||| Sbjct 96047 GATTAGTCGGGATGAGG 96063 >seq410 Length=233677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||||||||| | ||| | ||| ||| | | || ||| Sbjct 231110 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 231051 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 231050 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 230991 Query 221243 CTGTT 221247 ||||| Sbjct 230990 CTGTT 230986 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| || ||||| |||||||||| || ||| || ||||||| || ||||||||| Sbjct 229619 CATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCCTCTGCTCCTCTTT 229560 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| ||| ||| ||||| || ||||| | || |||||||||||||| || Sbjct 229559 ACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 229500 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 229499 CACAGCGAAGGCCCCGGGTCTCT 229477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928660517191680