Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq410 107 2e-18 seq954 82.4 9e-11 >seq410 Length=233677 Score = 107 bits (118), Expect = 2e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | || || || |||| ||||| || || || || ||||| ||||| ||||| Sbjct 230003 GTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAA 230062 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 230063 GACGCCTGCAACAGGAAGAGCAACCARCAGAATCTGGGCACCATCAAATCCAGCAATCTG 230122 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||||| || ||||||||||| ||| |||||| Sbjct 230123 TGCACGGAGATCGTAGAGTACACAAGTAAAGATGAG 230158 >seq954 Length=166441 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || |||||| |||||||| |||||||||||||| |||||| || Sbjct 95931 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 95990 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | |||| | |||||| | || || ||||| ||||| || ||| || || || ||| Sbjct 95991 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 96050 Query 65197 TCCCGAGATGAGG 65209 || ||||||| Sbjct 96051 AGTCGGGATGAGG 96063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596451240591360