Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13214 149 8e-30 seq8995 140 4e-27 seq9970 123 3e-22 seq4042 102 1e-15 seq410 96.9 4e-14 seq844 91.5 2e-12 seq954 87.8 2e-11 seq4013 86.0 8e-11 >seq13214 Length=3189 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 455 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCTCTGGAGGTGA 396 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| | ||| ||| ||||||| | ||||||| || | | Sbjct 395 TGGTGGAGCGCTTGTTGTAGTGAGTCAGCCGGGAGGCCTCGCCGGCGATGCGCTCAAAGA 336 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 335 TGTCGCTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 276 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 275 GGACCTGCTTCAGCACTTTGTA 254 >seq8995 Length=12519 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||| ||||||||||| | | | || Sbjct 7490 GCTTGGCCAGCTCACCGAGCAGCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGA 7431 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||||||| |||||| | ||||||| || | | Sbjct 7430 TGGTGGAACGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGA 7371 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 7370 TGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 7311 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||| ||||| Sbjct 7310 GCACCTGCTTCATCACTTTGTA 7289 >seq9970 Length=11504 Score = 123 bits (136), Expect = 3e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||| || |||||||||||||| | | ||| ||| Sbjct 2743 GCCAGCTCACCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTG 2684 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| |||||| | ||||||| || | ||||| Sbjct 2683 GAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCD 2624 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| |||||||||| ||| | ||| ||||||||| ||| ||||| ||| Sbjct 2623 CCCACAAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACC 2564 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 2563 TGCTTCATCACCTTGTA 2547 >seq4042 Length=66395 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 55758 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 55817 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 55818 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 55868 >seq410 Length=233677 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||| ||| || | | || ||||| ||||| |||||| | || Sbjct 230136 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGGTTGCTCTTC 230077 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| |||||| |||| ||||||||| |||| |||||| ||| |||||| ||| | Sbjct 230076 CTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 230017 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 230016 ATGGCGTACCACACCTG 230000 >seq844 Length=176084 Score = 91.5 bits (100), Expect = 2e-12 Identities = 121/165 (73%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 ||||| || ||||| || ||||||||||| ||||| || || ||||||||||| ||||| Sbjct 39181 CCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCT 39122 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGGGTGCG 1630297 ||||| |||| | |||||| | | || ||||| ||| || | || | | || Sbjct 39121 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTGTTG-- 39065 Query 1630298 CCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 || || ||||||||||||||||| | || ||||||| ||| Sbjct 39064 --GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 39022 >seq954 Length=166441 Score = 87.8 bits (96), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 || || ||||| |||| |||||| ||| ||||| ||||| || || | ||||||| Sbjct 96061 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 96002 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||||||||| ||| ||| ||||| ||||||||||| || || ||||| Sbjct 96001 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAA 95946 >seq4013 Length=57766 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 52226 GCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 52167 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| || |||||||| Sbjct 52166 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACGTTCAACATCAA 52117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105836669351424