Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13214 201 2e-45 seq8995 188 1e-41 seq9970 167 4e-35 seq329 136 6e-26 seq11498 96.9 5e-14 seq4042 93.3 7e-13 seq954 89.7 8e-12 seq410 89.7 8e-12 seq11716 86.0 1e-10 >seq13214 Length=3189 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 494 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 435 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 434 GCAGCAGGCGGACGGCGGTCTGGATCTCTCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 375 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| ||| ||||||| | ||||||| || | |||||| |||| || ||||||| Sbjct 374 GAGTCAGCCGGGAGGCCTCGCCGGCGATGCGCTCAAAGATGTCGCTGACGAAGGAGTTCA 315 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 314 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACTTTGT 255 Query 1485710 AAAC 1485713 | || Sbjct 254 ACAC 251 >seq8995 Length=12519 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 7529 TGTACTTGGTCACGGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGAGCA 7470 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||||||||| | || | ||| ||| |||||||| | Sbjct 7469 GCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 7410 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | |||||| | || || ||||||| Sbjct 7409 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCTCACGAAGGAGTTCA 7350 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| | ||| |||| Sbjct 7349 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCATCACTTTGT 7290 Query 1485710 AAAC 1485713 | || Sbjct 7289 ACAC 7286 >seq9970 Length=11504 Score = 167 bits (184), Expect = 4e-35 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 2787 TGTATTTGGTCACAGCCTTGGTTCCCTCAGACACGGCGTGCTTTGCCAGCTCACCGGGCA 2728 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || |||||||||||||| | || ||| ||| ||||||||| | Sbjct 2727 GCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGT 2668 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | ||||| ||||| ||||||| Sbjct 2667 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCDCCCACAAAGGAGTTCA 2608 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| ||||| |||||||| | |||||||| Sbjct 2607 TGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACCTGCTTCATCACCTTGT 2548 Query 1485710 AAAC 1485713 | || Sbjct 2547 ACAC 2544 >seq329 Length=259873 Score = 136 bits (150), Expect = 6e-26 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 59658 TGTACTTGGTGACAGCTTTGGTTCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCGGGCA 59717 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||||||||| | ||| | | || ||| ||| ||| || || || | Sbjct 59718 GCAGCAGCCTCACGGCGGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 59776 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||||||| |||| || || | || |||||| || || |||||| Sbjct 59777 TGAGCCAGCCGGGACGCCTCGGTGGCGATCCGCTCAAACAGGTCGTTCACGAAGGAGTTC 59836 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | | |||| |||||| ||| | || ||||| Sbjct 59837 ATGATGCTCATGGCTCGGCTGGAAATGCCCGTGTCCGCATGAACCTG 59883 >seq11498 Length=8624 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| || |||||||||||||| |||||||||| ||| || ||| Sbjct 6304 ACCTCCTCTGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6363 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || |||||| |||||||| ||||||||||| Sbjct 6364 TACTGGATGGGGAAGACGACGAAGCGACGAGGGTTCTCCTTCAGCAGCGGCTC 6416 >seq4042 Length=66395 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 55758 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 55817 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| ||||| || ||||| ||||||| |||||| ||||||| Sbjct 55818 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 55868 >seq954 Length=166441 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| | || ||||| |||| |||||| || ||||| ||||| || || | || Sbjct 96065 CACCT-CATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCT 96007 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||||||||||||| ||| ||| ||||| ||||||||||| || || |||| Sbjct 96006 TCTTGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAA 95947 Query 794459 A 794459 | Sbjct 95946 A 95946 >seq410 Length=233677 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTC 2069675 ||| || ||||||||||| | ||| |||||||||||||| ||| |||| | ||| Sbjct 231105 AAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATGGACTC 231046 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 | |||||||||||||||| | || | || ||||||||| | |||| |||||| Sbjct 231045 GTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAG 230992 Score = 86.0 bits (94), Expect = 1e-10 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| ||||| |||||||| || Sbjct 230136 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGGTTGCTCTTC 230077 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| |||||| |||| |||||||| |||| || || ||| |||||| || | Sbjct 230076 CTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 230017 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 230016 ATGGCGTACCA 230006 >seq11716 Length=4310 Score = 86.0 bits (94), Expect = 1e-10 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1485550 TGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCG 1485609 |||||||| | || ||| ||| ||||||||| | | ||||| || |||||| Sbjct 4149 TGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGTGAGCCAGAYGGGAGGCCTCA 4208 Query 1485610 GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTG 1485669 | ||||||| | | |||| | ||||| ||||||||||| ||| | |||| | Sbjct 4209 CCGGCGATGCGCTTTAAGATGTTGCCCACAAAGGAGTTCATGATGCCCATGGCTTTGGAG 4268 Query 1485670 GAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||||| ||| ||||| |||||||| | ||||||||| Sbjct 4269 GAGATGCCGGTGTCTGGGTGGACCTGCTTCATCACCTTGTA 4309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914558022967808