Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq170 127 2e-24 seq410 118 1e-21 seq844 82.4 7e-11 >seq170 Length=344817 Score = 127 bits (140), Expect = 2e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || |||||||| || ||||| ||| | ||| ||| | || || |||| Sbjct 171749 ATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA-TCTTCCAGCT 171807 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||||||||| ||||| Sbjct 171808 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCT 171867 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| |||||| ||||||| || || | |||| ||| ||||| | Sbjct 171868 TGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAG 171927 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || ||||||||| Sbjct 171928 TGAGGGTCTTCACAAAGATCTGCATG 171953 Score = 122 bits (134), Expect = 8e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 171521 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 171579 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| || || || |||||||||||||| ||||| Sbjct 171580 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 171639 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| |||||| |||| || || || | ||||| ||| ||||| | Sbjct 171640 TGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAG 171699 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || ||||| ||||||||| Sbjct 171700 TGAGGGTCTTAACGAAGATCTGCATG 171725 >seq410 Length=233677 Score = 118 bits (130), Expect = 1e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 230144 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGGT 230085 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||| ||||| |||||||| || ||| ||||| ||||| Sbjct 230084 TGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCG 230025 Query 148984 TTTC 148987 ||| Sbjct 230024 ATTC 230021 >seq844 Length=176084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 217/327 (66%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 149418 ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477 || ||||| || ||| | | || |||||| ||||| | ||||| ||| ||| Sbjct 39184 ACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATG 39125 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 || |||||||||||| ||||||| ||||| ||||| | ||| || || Sbjct 39124 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 39065 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCG 149597 || || || ||| | |||||| |||||| || || | |||| || || | | Sbjct 39064 GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 39005 Query 149598 TACGACTCGAGCACGCGGTCCATGTC-ATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 |||| ||| | | ||| ||||| ||| ||||| || | || || | ||| || Sbjct 39004 TACGTCTCAATGGCTGCGTCGATGTCCATCTTG-TGGATCCCGACGGACACTCTCATGAG 38946 Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCT 149714 ||| |||||||||||||| ||||||||| || || | || |||| ||| || Sbjct 38945 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCC 38888 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAG 149741 || |||||| |||| ||| | |||||| Sbjct 38887 AGAGTCTTGAAGCCGAAGAAGTTGTAG 38861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483324889313280