Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq170 109 4e-19 seq9656 84.2 1e-11 >seq170 Length=344817 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | ||| | ||| || ||| ||| || || |||||||| ||||| Sbjct 171497 ACCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 171556 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || || ||||| |||| | |||||||||| | || Sbjct 171557 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 171616 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || ||||| | | ||| ||||||||| | ||| | Sbjct 171617 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTCTCAATGGTGTCGCTGGGTTCAA 171675 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||||||||| Sbjct 171676 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 171724 Score = 100 bits (110), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || || ||||| || |||||||| |||||| Sbjct 171726 CCACCCCTCAGACGCAGGACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAG 171785 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 171786 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 171845 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| | | ||| ||||||||| | || || Sbjct 171846 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGCTGGGCTCGAC 171904 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 171905 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 171952 >seq9656 Length=12402 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/134 (72%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||| | ||| || ||| ||| || || |||||||| |||||| Sbjct 162 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 103 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 102 AGGGTGCGRCCRTCTTCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRTCTGGRGGR 43 Query 33643 ACACCTTCTTTGTC 33656 | ||||| || || Sbjct 42 ATGCCTTCCTTATC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328640415498240