Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1294 105 2e-19 seq7239 102 3e-18 seq1632 100 9e-18 seq4563 98.7 3e-17 seq2110 98.7 3e-17 seq1198 98.7 3e-17 seq1088 98.7 3e-17 seq80 98.7 3e-17 seq5290 96.9 1e-16 >seq1294 Length=143038 Score = 105 bits (116), Expect = 2e-19 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 2763 TTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 ||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3199 TTTATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 3140 Query 2823 TCAACCCCGGGCTTCAGC 2840 || | |||||| ||| || Sbjct 3139 TCGATCCCGGGTTTCGGC 3122 >seq7239 Length=19821 Score = 102 bits (112), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 155 TATGTGCCGAAATAGCTCAGTTGGGAGAGCRTTAGACTGAAGATCTAAAGGTCCCTGGTT 214 Query 2824 CAACCCCGGGCTTCAGC 2840 | | |||||| ||| || Sbjct 215 CGATCCCGGGTTTCGGC 231 >seq1632 Length=118182 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 91840 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 91781 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 91780 CCCGGGTTTCGGC 91768 >seq4563 Length=45805 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 45243 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTTATC 45302 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 45303 CTGGGTTTCGGC 45314 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 45621 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 45680 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 45681 CCGGGTTTCGGC 45692 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 44862 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGATTCAATC 44921 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 44922 CTGGGTTT 44929 >seq2110 Length=112433 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 110969 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 111028 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 111029 CCGGGTTTCGGC 111040 >seq1198 Length=141946 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 129438 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 129497 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 129498 CCGGGTTTCGGC 129509 >seq1088 Length=158459 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3908 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3967 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3968 CCGGGTTTCGGC 3979 >seq80 Length=463091 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 151035 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 150976 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 150975 CCGGGTTTCGGC 150964 >seq5290 Length=36220 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 1 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 60 Query 2833 GCTTCAGC 2840 | ||| || Sbjct 61 GTTTCGGC 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846848509440