Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13214 158 2e-32 seq8995 140 5e-27 seq9970 123 4e-22 seq329 107 3e-17 seq410 96.9 5e-14 seq4042 87.8 3e-11 seq11498 86.0 9e-11 seq844 86.0 9e-11 >seq13214 Length=3189 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| ||||| |||| |||| ||| |||| ||||| Sbjct 254 TACAAAGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCATG 307 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||| |||||| | || ||||||| | ||||||| || Sbjct 308 GGCATCATGAACTCCTTCGTCAGCGACATCTTTGAGCGCATCGCCGGCGAGGCCTCCCGG 367 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||| | | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 368 CTGACTCACTACAACAAGCGCTCCACCATCACCTCCAGAGAGATCCAGACCGCCGTCCGC 427 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 428 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 476 >seq8995 Length=12519 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 7289 TACAAAGTGATGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 7342 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| | || ||||||| | |||||| || Sbjct 7343 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 7402 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||| ||||| ||| Sbjct 7403 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTCCGC 7462 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 7463 CTGCTGCTGCTCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGTACCA 7511 >seq9970 Length=11504 Score = 123 bits (136), Expect = 4e-22 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| ||| ||| ||||| Sbjct 2547 TACAAGGTGATGAAGCAGGTCCACCCAGACACCGG-----CATC-TCCTCCAAAGCCATG 2600 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | || ||||||| | |||||| || Sbjct 2601 GGCATCATGAACTCCTTTGTGGGHGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 2660 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | |||||||||||||| || ||| Sbjct 2661 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCTGTCCGC 2720 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||| | ||||||||| || ||||| |||| Sbjct 2721 CTGCTGCTGCCCGGTGAGCTGGCAAAGCACGCCGTGTCTGAGGGAACCA 2769 >seq329 Length=259873 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || || |||||| || | || || |||| ||||||||| Sbjct 59849 CCATGAGCATCATGAACTCCTTCGTGAACGACCTGTTTGAGCGGATCGCCACCGAGGCGT 59790 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | ||| || ||| ||| ||| || | ||| | |||||||||| Sbjct 59789 CCCGGCTGGCTCAGTACAATAAACGCTCCACCATCACCAGCAGAGAGGTGCAGACCGCCG 59730 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| |||||||| |||||||| |||| Sbjct 59729 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGAACCA 59676 >seq410 Length=233677 Score = 96.9 bits (106), Expect = 5e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | || | ||| ||||||||||| |||||| ||||| Sbjct 230000 CAGGTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTAC 230059 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 || |||||| |||| || |||||||| ||||| |||||||||| | | ||| Sbjct 230060 AAAGACGCCTGCAACAGGAAGAGCAACCARCAGAATCTGGGCACCATCAAATCCAGCAAT 230119 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 230120 CTGTGCACGGAGATCGT 230136 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| |||| | Sbjct 230993 TGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAACGAGTCCA 231052 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| ||| |||||||||||||| ||| | ||||||||||| || ||| Sbjct 231053 TTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 231105 >seq4042 Length=66395 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| |||||||||| Sbjct 55868 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCAGGTCATGGTGTCGCA 55810 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 55809 CAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 55758 >seq11498 Length=8624 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 6416 GAGCCGCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 6357 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || |||||||||||||| || ||||| || |||||||| Sbjct 6356 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCAGAGGAGGT 6304 >seq844 Length=176084 Score = 86.0 bits (94), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | ||||||||||| || || || || | | Sbjct 39013 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGC 39072 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||| ||||| || | Sbjct 39073 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACG 39132 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 ||||||| ||||| ||||| ||||||||||| | ||||| || |||||| Sbjct 39133 ACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGAATCGGT 39182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176280316427264