Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq844 167 3e-36 seq954 114 2e-20 >seq844 Length=176084 Score = 167 bits (184), Expect = 3e-36 Identities = 468/715 (65%), Gaps = 8/715 (1%) Strand=Plus/Minus Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| ||||| || || ||| ||||| || || || | |||| ||||| || || || Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA-TGTATAG 69991 || ||||| || ||| ||||| || || || ||||| |||| || | ||| | | Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT-TGG 39064 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 |||| || || || | || || || ||||| |||||||| || || || ||||| |||| Sbjct 39063 TTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 39004 Query 70052 ATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 | || ||||| |||| || || ||| || || || || | | || | ||| | || Sbjct 39003 ACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCA 38944 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | ||||| ||||| || || ||| || || ||||||||||| || ||||||| Sbjct 38943 TGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAG 38884 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 | || || || || ||||||| || || ||||| ||| |||| || | || || || Sbjct 38883 TCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGC 38824 Query 70232 TATCCTTATATTTGGTAACTATATC---CATAACAGTAGGTGAGATAATCGGAGATCGTT 70288 || || | | | ||| || || | | | | ||||| || || || | Sbjct 38823 GGTCTTTGTTCTCGAGAACGATGTCGAGCGTCTCCTT---GGAGATCATGGGCGAGTGGC 38767 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 ||||| || || | |||||| | | || ||||| || || || || | || | Sbjct 38766 GGTCATTTAAGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCT 38707 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | || || ||||| | ||||| | ||| || | || || || || || ||||| || | Sbjct 38706 TCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGT 38647 Query 70409 GTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAA 70468 | | || || ||| || | || || ||||| | ||| || | || | || || | Sbjct 38646 GCTTAGTTGTGAGAGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGA 38587 Query 70469 CTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTG 70528 | ||| | || | || || || || ||||||| || | | ||||| | ||| || | Sbjct 38586 CGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAG 38527 Query 70529 TGTTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC 70583 |||||| || || || | || || ||| | || ||||| || ||||| || Sbjct 38526 AGTTCAGTCCGTAGCACAGCTTCTGGATGCGACAGGTGATTTTGTCGAACATGAC 38472 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || |||||| || | || || || || || || | Sbjct 41751 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 41692 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || |||||| | || || | || || ||||| || | ||| ||| Sbjct 41691 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCT 41632 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||||| || ||| | | ||| || | ||||||||||| Sbjct 41631 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 41581 >seq954 Length=166441 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| | |||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 96063 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 96004 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||||| |||||||| || || || || ||||||||||| || ||||| ||||| | Sbjct 96003 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 95944 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 95943 CCACAATTCGCTCCCC 95928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686772517294080