Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4617 109 4e-19 seq8671 104 2e-17 >seq4617 Length=47841 Score = 109 bits (120), Expect = 4e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| ||||||||||| ||| ||| |||||||||||| |||||| || ||||| | Sbjct 35126 CCAGACGACCTCCAGCTCTGCATTCAGTCGGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 35185 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| ||||| | ||||| |||||||||| ||||||||||||| ||||| | | Sbjct 35186 GATCTGA-CCTCCAGATTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGGTGG 35244 Query 77430 TCACACC 77436 ||||||| Sbjct 35245 TCACACC 35251 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||||| |||||||||||| || |||||||| | Sbjct 35343 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTTATGTTGTTCTCTT 35402 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | ||||||||| Sbjct 35403 TGGCTTGTTCCAGCGCTTTGCAGGCAGCCTGG 35434 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 36482 CTCCTCTGAAGAACGCCCAGGCATCTTTCTCTGACGCAAACTTCTTGAAAGAGGCGGCGG 36541 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| || ||||||||||||||||||| Sbjct 36542 GAAATTTGTCCACCTGGCTCTTACATTCATCCC 36574 >seq8671 Length=13400 Score = 104 bits (114), Expect = 2e-17 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 87316 CATGCAAACAATC---CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAG 87372 |||| ||||| || ||||||||||||| || || ||| |||| || || || || ||| Sbjct 2966 CATGAAAACACTCACCCTGCTCCCAGTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAG 3025 Query 87373 ACTGTCAAGCCAGCAAACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTAT 87432 ||||||| ||||||||||||||||| || | | | | ||| || | ||||||||| Sbjct 3026 ACTGTCAGTCCAGCAAACACAGCACAGGTCAGGCACAAGGCTTGCAGGACAGTGGAGTAT 3085 Query 87433 TCATAGAAGGTCA 87445 || |||||||||| Sbjct 3086 TCGTAGAAGGTCA 3098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397379116111360