Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq844 145 8e-30 seq954 96.9 4e-15 seq410 89.7 6e-13 seq11498 84.2 2e-11 seq10286 84.2 2e-11 >seq844 Length=176084 Score = 145 bits (160), Expect = 8e-30 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| ||||||| | ||||||||| | ||||| | ||| ||||| ||||| ||||| Sbjct 39181 CCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCT 39122 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| |||||| ||||| |||| |||||||||||| |||| |||||| |||| || Sbjct 39121 TCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTT 39062 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || ||||||||||| || || | ||||| ||||| |||| | || ||| | |||| Sbjct 39061 CCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAC 39002 Query 79834 GTCTC 79838 ||||| Sbjct 39001 GTCTC 38997 >seq954 Length=166441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| ||||| || ||||||||||| ||||| ||| ||| || || |||||| Sbjct 95943 GCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGGCTC 96002 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| ||||| ||| Sbjct 96003 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGATGAG 96062 Query 60111 G 60111 | Sbjct 96063 G 96063 >seq410 Length=233677 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| |||||||| Sbjct 230140 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGGTTGCT 230081 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| |||||||| |||||| |||||| ||||| ||||| || Sbjct 230080 CTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTC 230033 >seq11498 Length=8624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 2755 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 2696 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 2695 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 2667 >seq10286 Length=7128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 494 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 553 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 554 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548415972679680