Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq844 107 2e-18 seq2477 86.0 7e-12 seq954 84.2 2e-11 seq561 82.4 8e-11 >seq844 Length=176084 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | || || || ||||| Sbjct 38996 TGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 39055 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || ||||| || ||| Sbjct 39056 CGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAG 39115 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| | || |||| ||||||||| | | || || Sbjct 39116 CATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGG 39175 Query 53422 TATCGGT 53428 |||||| Sbjct 39176 AATCGGT 39182 >seq2477 Length=99938 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | |||||||| || || || ||||||||||| Sbjct 55783 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCGTGCAACCTGGTTCCAAACTGA 55724 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | ||||| | ||||||| |||||||| ||||| |||||| || Sbjct 55723 CCCAGA-GGCTGCAACAGGTTCAAGTTGTTGCTTCCCACGAAGTTCTGGGCCAAACCAAC 55665 Query 152148 AATCGT 152153 ||| || Sbjct 55664 AATGGT 55659 >seq954 Length=166441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| | || |||| || || || | | |||||||||||| ||||| | |||||| Sbjct 96061 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 96002 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||||||| ||| || || |||||||||||| || || |||||| || Sbjct 96001 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAGCC 95942 Query 74892 ACAA 74895 |||| Sbjct 95941 ACAA 95938 >seq561 Length=213085 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || ||||| || || Sbjct 62175 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 62234 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 62235 CCCAGTGGCTGCAGGATGTTGGCGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 62294 Query 117425 ATCGT 117429 || || Sbjct 62295 ATGGT 62299 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || ||||| || || Sbjct 63367 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 63426 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 63427 CCCAGTGGCTGCAGGATGTTGGCGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 63486 Query 117425 ATCGT 117429 || || Sbjct 63487 ATGGT 63491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547107432345600