Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq170 187 3e-42 >seq170 Length=344817 Score = 187 bits (206), Expect = 3e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | | Sbjct 171952 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAGC 171893 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 171892 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 171833 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 171832 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 171773 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||||| ||| ||||||| | ||||| Sbjct 171772 ATCCAGAAAGAATCYACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 171726 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || |||||||| | | Sbjct 171724 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 171665 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || || ||||||||||| || ||||| ||||| ||| Sbjct 171664 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 171605 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 171604 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 171545 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||| || ||||| || ||||||| | || || ||| Sbjct 171544 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGGTCAA 171494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | | Sbjct 179498 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 179439 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 || | ||||| || ||||||| || || ||||||||||| || ||||| Sbjct 179438 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCC 179389 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 || || ||||| |||||||||||| | || || ||||| || ||||| || || |||| | Sbjct 176618 GAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGT 176559 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || ||||| | ||||| || |||| || ||||| || || ||||| || ||||||| Sbjct 176558 CGCACCCTCTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGTGCTGCGTCT 176500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570197250416640