Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1998 136 3e-27 seq1408 116 3e-21 >seq1998 Length=115458 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 72338 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 72279 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 72278 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 72219 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 72218 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 72164 >seq1408 Length=140839 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 || ||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 14868 TCTCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 14927 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 14928 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 14969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||||||||| | ||| |||| | || ||||| || ||||| ||| ||| Sbjct 7390 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCRCACTCAA 7449 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | | ||||| ||||| ||| | ||||| |||||||||| | |||| Sbjct 7450 ACTGCTTCAGGATTCGCGTGACGAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTCC 7508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 110574 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACCGTT 110633 ||| ||||| | ||| || ||||||||||||| ||| |||||| | ||||||||| |||| Sbjct 18925 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 18984 Query 110634 CAGAATGAGGGGCATGGT 110651 ||||||| ||| ||| || Sbjct 18985 CAGAATGCGGGACATCGT 19002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406231803316224