Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq170 178 3e-39 seq9656 114 3e-20 seq352 89.7 1e-12 >seq170 Length=344817 Score = 178 bits (196), Expect = 3e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || ||||| |||||||| || || | ||||| | |||||| Sbjct 171741 AGGACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 171800 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 171801 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 171860 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 171861 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTC 171920 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 171921 TTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 171955 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 171513 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 171572 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 171573 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 171632 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || |||||||| | ||||||||| || ||||| ||| Sbjct 171633 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTC 171692 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 171693 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 171724 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 211005 GGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCA 211064 |||| |||||||||||||||||||| |||||||| || |||||||| | || Sbjct 179389 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCG 179448 Query 211065 ACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| || ||||| ||||| ||||| | |||||| || Sbjct 179449 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 179501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || ||||| |||||||| || || | ||||| | |||||| Sbjct 176506 AGCACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 176565 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||||||| || ||||| || | || ||||| || |||| ||||| Sbjct 176566 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTC 176618 >seq9656 Length=12402 Score = 114 bits (126), Expect = 3e-20 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 147 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGRCCRTCT 88 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || || || || || | |||||||| ||| Sbjct 87 TCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRTCTGGRGGRATGCCTTCCTTATCC 28 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| || |||||||| ||| Sbjct 27 TGGATCTTGGCCTTGACGTTTTCAATG 1 >seq352 Length=259686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| ||||| |||||| Sbjct 252625 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGACACAAC 252684 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| ||||||| || || |||| || | ||| ||| | ||| |||| |||| | Sbjct 252685 TACGTGAGAAAGGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 252741 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| ||||| | || Sbjct 252742 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCG 252801 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 252802 GACATGTTCGACCC 252815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158916274849280