Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1998 120 2e-22 seq1408 107 2e-18 >seq1998 Length=115458 Score = 120 bits (132), Expect = 2e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| || || || | | |||| Sbjct 72316 AAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAG 72257 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| |||| | ||| || ||||||||||| ||||| ||||| ||| | Sbjct 72256 CCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTCACCCCTTTCGCT 72197 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 |||||||| |||| |||||| || |||| |||| Sbjct 72196 GAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 72164 >seq1408 Length=140839 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || ||||||||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 14868 TCTCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 14927 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 14928 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 14969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||||||||||||| | ||| |||| | || ||||| || |||| ||| ||| Sbjct 7390 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCRCACTCAA 7449 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 114160 | ||| || | | ||||| ||||| ||| | |||||| |||||||||| | |||| Sbjct 7450 ACTGCTTCAGGATTCGCGTGACGAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTCC 7508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| ||||| ||| ||||| | ||| || ||||||||||||| ||| |||||| | Sbjct 18911 AGTCTAACCGGCGTCCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACC 18970 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534 ||||||||| ||||||||||| ||| ||| || Sbjct 18971 GCCACGATAGCGTTCAGAATGCGGGACATCGT 19002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406084631790592