Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1998 132 4e-26 seq11398 111 1e-19 >seq1998 Length=115458 Score = 132 bits (146), Expect = 4e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||| || || || |||||||| ||||| || ||||| ||||||||||| Sbjct 72338 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 72279 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 72278 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 72219 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 72218 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 72164 >seq11398 Length=6074 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||||| || ||||| || || || | |||| | || | |||||||| | ||| Sbjct 2615 GGTGAATGGGTGGGGGAAATTCTACCTTCCCAAAGTAGTAAGCATGCAGGTTGTAGGTGT 2674 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| |||||| | | || |||||||||| || ||||||||||| |||||| || Sbjct 2675 AGTGGAGGGAACCTCGTGCCCGAGTGACCAGCTCGTTCTGATGACCTGTGAGGACAGAAA 2734 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 |||||| | ||| || ||||| |||||||| |||||||| | ||| ||| | Sbjct 2735 GGTGTATGCCTACGATGGAGAGAAGCTGCATTTGGTGGCTTCAAGCCTGAGGCAGCTACA 2794 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | | |||||| ||||| ||| | |||| ||||| | |||||||||| |||||| Sbjct 2795 TTACAAGGGAATAAAGTATCCAGCACCCAAGAGATATTACAAAGGGGAGGCCTACAAACA 2854 Query 69314 TATG 69317 ||| Sbjct 2855 CATG 2858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369435722527232