Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq410 98.7 1e-15 seq844 93.3 6e-14 seq954 89.7 7e-13 >seq410 Length=233677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| || || || |||||||||||||| ||||| || | |||||| | Sbjct 227051 CACCACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCA 226992 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | |||||| ||||| |||| || || |||||||| | ||||| || | | | | Sbjct 226991 GGAGAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGT 226932 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 | | ||| | || ||||||||| | || || || || || || ||||| Sbjct 226931 CCAGCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 230133 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGGTTGCTCTTCCTG 230074 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | ||| || || || || | || || |||||||| |||| |||||||| || Sbjct 230073 TTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 230015 >seq844 Length=176084 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| ||| |||| |||||||| ||||||||| || | || || || || || || | Sbjct 41751 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 41692 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || || |||||| | || || | || || ||||| || | || |||| Sbjct 41691 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCT 41632 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||||| ||||| | | || || | ||||||||||| Sbjct 41631 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 41581 >seq954 Length=166441 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | |||||| | ||||| || | || || || ||||||||||| | || ||| Sbjct 96061 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 96002 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| || || ||||| || || || ||||| ||||| || || |||||||| || Sbjct 96001 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAGC 95943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694530977710080