Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq170 163 2e-35 seq9656 102 6e-17 >seq170 Length=344817 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || || || ||| |||||| ||||||||||| |||| | Sbjct 171498 CCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 171557 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||||||||||| || Sbjct 171558 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 171617 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| |||| | |||| | ||||||||| || ||| || Sbjct 171618 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 171676 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || ||||||||||| |||||||| |||||| Sbjct 171677 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 171725 Score = 136 bits (150), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || || || || || || || || ||||||||||| || Sbjct 171722 CATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTC 171781 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || |||||||||| | |||||| |||| Sbjct 171782 GGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 171841 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 171842 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCT 171900 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||||||||| ||||| |||||| Sbjct 171901 CGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 171953 >seq9656 Length=12402 Score = 102 bits (112), Expect = 6e-17 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||| || | | ||| || || || ||| |||||| ||||||||||| |||| Sbjct 163 TCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 104 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| | || ||||||||||| || |||||||||| | |||||| |||| || Sbjct 103 GAGGGTGCGRCCRTCTTCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRTCTGGRGG 44 Query 44230 CACACCTTCCTTTTCCGTTATCTT 44253 | |||||||| ||| ||||| Sbjct 43 RATGCCTTCCTTATCCTGGATCTT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359920763457024