Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2751 161 1e-34 seq2358 145 1e-29 >seq2751 Length=74470 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||||| | ||||| || ||| | | ||| | |||||||| |||| ||| Sbjct 41967 CCCTGCACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCC 41908 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||| ||||||||| ||| |||| Sbjct 41907 ACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAGCAGATGGGGTTTCCCATT 41848 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || |||||||||||| Sbjct 41847 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTG 41788 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | |||||||| ||||||| | || | ||| || ||||| || ||||||| Sbjct 41787 GTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACGGCGTCGACGT 41736 Score = 102 bits (112), Expect = 1e-16 Identities = 203/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | |||||||| | Sbjct 40806 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 40747 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | | ||| |||||| |||| || ||| | |||| |||| | | | ||||| | Sbjct 40746 GTCACCACGGAGTTGTTGAAGACAAACTGTTTA--TAGTTGTACTCTTTCTCCTCAATGT 40689 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || | Sbjct 40688 GGAAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGC 40629 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | || ||||||||||| || | || ||||| ||||| | |||| |||| || Sbjct 40628 GGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAG 40570 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 | |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 40569 TTATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 40514 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | |||||||| || |||||| ||| || || || | |||| Sbjct 39947 ATGAGCCGTGATGTCTGGAAGAGCCTCTCGTCGTCCCAGTCCGGGTGGACCGCCTTCAAC 39888 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||||| ||||||||| | |||||||| |||||||||||||| || || || Sbjct 39887 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 39828 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| || | ||||| Sbjct 39827 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGG 39768 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 ||| ||||| || || || || || | |||||||||| Sbjct 39767 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACA 39725 >seq2358 Length=92096 Score = 145 bits (160), Expect = 1e-29 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| || | |||||||| | Sbjct 46274 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGCAGTTTTGACGATATTG 46333 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 46334 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 46393 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| |||||||| ||||| |||| ||| | || |||||||| ||||| Sbjct 46394 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 46453 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | || || | ||||| | || | |||| ||| | ||||| ||| || | ||| Sbjct 46454 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 46513 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 46514 CCGTAGAG 46521 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| | | |||||||| | Sbjct 60479 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGAAGTTTTGACGATATTG 60538 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 60539 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 60598 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||| || |||||||| ||||| |||| ||| | || |||||||| || | Sbjct 60599 CCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGT 60658 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||||||||| | || |||| || || |||| ||| | ||||| ||| || | ||| Sbjct 60659 CTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCA 60718 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 60719 CCGTAGAG 60726 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| | ||||||||| || ||||| || ||| |||||| Sbjct 64588 TCACCAATGATGATGAGTCTGGCGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 64647 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| | ||| || ||||||||||| Sbjct 64648 TCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGCGTACATG 64707 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | |||||||| |||| ||||||| ||||||||| | | | || Sbjct 64708 GTGAGGCCCGGCAGGAGGCCAAATACCTCATGACCGATGGCCAGACGCTTCTCTGGAGGG 64767 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | |||||| | ||||||||| |||| || || | || || ||||| ||| Sbjct 64768 AAGTTTTCAGGATAAACCATGTGCACAGGGACTTCAGCTACTGTAGGAGGGTACATCTCA 64827 Query 9472 CC 9473 || Sbjct 64828 CC 64829 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| ||||||||||| || ||||| | ||| |||||| Sbjct 48193 TCACCAATGATGATGAGTCTGGTGGTCTGGAAGAGCTGCTCATTGTCCCAGGTGGGATGT 48252 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| | ||| || |||| ||||| Sbjct 48253 TCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGAATACATG 48312 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399 |||| || || | |||||||| ||| ||||||| ||||||||| Sbjct 48313 GTGAGGCCCGGCAGGAGGCCAAATAACTCATGACCGATGGCCAGACGC 48360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716734571642880