Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq170 145 7e-30 seq9656 104 2e-17 >seq170 Length=344817 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 171498 CCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 171557 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| | ||| || || | |||| Sbjct 171558 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 171617 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || |||| ||| | | |||||||| | || || Sbjct 171618 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAAC 171676 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || || || ||||| ||||| ||||||||| Sbjct 171677 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 171725 Score = 131 bits (144), Expect = 2e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 171735 AGACGCAGGACAAGATGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 171794 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 171795 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 171854 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 171855 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTG 171914 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || || ||||||||||| Sbjct 171915 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 171955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| | ||| ||||| || || || ||||| ||||| ||||| || Sbjct 176490 GCCGCCCCTCAGACGCAGCACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 176549 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || |||||||||||||| || ||||| | ||| ||||| | ||| Sbjct 176550 GAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 176609 Query 41755 AACGC 41759 || || Sbjct 176610 AATGC 176614 >seq9656 Length=12402 Score = 104 bits (114), Expect = 2e-17 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 153 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGR 94 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||| || || | || | || ||| Sbjct 93 CCRTCTTCCAGCTGCTTKCCAGCAAAGATCAGMCKCTGCTGRTCTGGRGGRATGCCTTCC 34 Query 41765 TTGTCCATGATTTT 41778 || ||| ||| || Sbjct 33 TTATCCTGGATCTT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462212278886400