Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq34972 430 2e-115 seq8304 87.8 2e-12 >seq34972 Length=31405 Score = 430 bits (476), Expect = 2e-115 Identities = 1270/1944 (65%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 53324 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 3160 Query 53325 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 53383 | || | || | | | | | || || || || ||| || || Sbjct 3159 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 3101 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 3100 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 3041 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 ||| || |||| |||||||| | |||| || || || || ||| || || Sbjct 3040 GCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAAC 2981 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || ||| | ||| || || || || || || ||||| || ||||| || || || || Sbjct 2980 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 2921 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 2920 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTG 2861 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 || | || |||| ||||||||| |||| | |||||| ||| ||||| |||| Sbjct 2860 TTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAA-GTCCG 2802 Query 53684 -TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT- 53738 || | || ||||||| | ||||| || |||||||| || || |||||||||| Sbjct 2801 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATC 2742 Query 53739 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | || | || || || ||||| || || || |||||||||| || | | Sbjct 2741 GTGGCTGGTG--TACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2684 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 || ||||| || ||||| |||| || || || || || || ||| ||||||| |||||| Sbjct 2683 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTT 2624 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTAT 53917 || ||||||| || |||| || | ||| | ||||||| | | ||| | Sbjct 2623 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAAC 2564 Query 53918 CTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 || || ||| |||| || || | ||| ||||| || ||||| | | Sbjct 2563 TTCCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCAT 2506 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 ||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 2505 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 2446 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 |||| || || || || ||||| || | || ||| || || |||| ||| || ||||| Sbjct 2445 TCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCC 2387 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 2386 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 2327 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | |||| || | ||||| || ||||| || | ||| | || ||||| Sbjct 2326 TACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 2267 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || |||||||||| ||| || | | || ||||| || ||||| |||| ||| ||| Sbjct 2266 TTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 2207 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || | | | || || || | | ||| || ||||| || ||| ||||| Sbjct 2206 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATG 2147 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | |||||| | || | ||| || || ||||| || || || || || ||||| || Sbjct 2146 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 2087 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | ||||| || || || | || || || ||| Sbjct 2086 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCG 2027 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||||||||| || |||| ||| || ||| Sbjct 2026 TGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC 1967 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | || || || || | || | ||| | ||||||||| |||| || | | ||| | Sbjct 1966 TTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 1907 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || |||| || |||||| |||| ||| || || || || ||||||| || || Sbjct 1906 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 1847 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| ||| |||| || | |||||||| || || | | | ||| | || | Sbjct 1846 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGC 1787 Query 54695 GTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 || | ||| || || || || || || ||||| || |||| ||||| | | Sbjct 1786 GT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAG 1728 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 |||| |||||| || || || | || || || |||||||| || ||||| ||||| || Sbjct 1727 GTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 1668 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 | || || || ||||| || || || || | || || |||||| | || || || Sbjct 1667 CCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGC 1608 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | ||| ||||| | || || || || || || | || | || ||||| |||||||| Sbjct 1607 AGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCAT 1548 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993 | || | ||||| | |||| ||| | || || || | || || || Sbjct 1547 GGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCG 1488 Query 54994 AGATGTGATTTTATCAAACATGAC 55017 | | |||||||| || |||||||| Sbjct 1487 ACAGGTGATTTTGTCGAACATGAC 1464 >seq8304 Length=64587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||||||||| || || || || | || || || | Sbjct 9293 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9352 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||| || || |||| || || |||||||| | || |||| ||||||||||| Sbjct 9353 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9412 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || ||| | || | || ||||| |||||||| Sbjct 9413 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593215407806880