Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq17722 158 1e-33 >seq17722 Length=45798 Score = 158 bits (174), Expect = 1e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| || |||| ||| |||| ||||||||| || || | |||||||| || ||||| || Sbjct 8222 GAGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGG 8163 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 |||||| || ||||| || || ||||||||||| ||||| || || ||||| ||| | Sbjct 8162 CACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCA 8103 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 |||||||||||| |||||| ||||||||| ||||| |||||| || |||||| || Sbjct 8102 CACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGTCAGGTCTGC 8046 Score = 109 bits (120), Expect = 6e-19 Identities = 124/164 (76%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| ||||||| ||||||||||||||||| || || ||||| |||||||| || ||| Sbjct 6468 GTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTC 6409 Query 146100 CC----TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGA 146155 | |||| ||||| | | | ||||||| ||||||||| ||||||||||| | Sbjct 6408 TCGATCTGTGA---AGCCCAGGTTGTCC-AGGAAGTTCCGGGACCCATTGGCGTCCCAAA 6353 Query 146156 TCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 |||| || || |||| |||||||| |||| || || || ||| Sbjct 6352 TCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCC 6309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589573715272240