Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14123 125 9e-24 >seq14123 Length=43291 Score = 125 bits (138), Expect = 9e-24 Identities = 186/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| ||||||||| | ||| || || ||||| || | || Sbjct 19832 GAACTTCTCGAAGTTCCAGGACACGTCGTTCCTGCAGACGGGGCTCCAGGTGATTAACTT 19891 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 |||||| ||| ||| | | ||||||||| || |||| || |||| | ||| Sbjct 19892 GGGGTCAGTCATGAGGGCGGATGGGTCGTCGCTGGGGAATGGCA--GCTTCTCCTTCAGG 19949 Query 83261 AAGGCGAAGAGCGGAT--GTGCCCTTGCACCGTTGACCTCGCAC-TTCTCGAAGAGCATA 83317 || | || || |||| || |||| ||||| ||||| ||| ||||| | ||| | Sbjct 19950 AACACAAACAGGGGATGGGTATCCTT--CCCGTTCACCTC-CACTTTCTCCAGCAGCTGA 20006 Query 83318 AAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCA 83377 || || ||||| |||||||| |||||||||| || |||||||||| | ||| || || Sbjct 20007 AACTTTGGCTCAAAGCCGTTTCCAGGACGGATGTACTTCAGGGAAATGAGGATTTCCTCA 20066 Query 83378 TTCTGGGCGTTTTCCTG 83394 |||| | ||| ||||| Sbjct 20067 TTCTTGCAGTTCTCCTG 20083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608277755068240