Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq27301 131 1e-25 seq15835 118 9e-22 seq33424 107 2e-18 seq12594 91.5 1e-13 >seq27301 Length=2015 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | Sbjct 1874 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1815 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| |||||||| || || ||| | || || | ||||||||| || Sbjct 1814 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 1755 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||| || | | | || |||| ||||||| Sbjct 1754 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACC 1695 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||| ||||| | || || ||||| || |||||||||| Sbjct 1694 TCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGA 1643 >seq15835 Length=21870 Score = 118 bits (130), Expect = 9e-22 Identities = 175/247 (71%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | |||||||||||| || ||||| ||||| | Sbjct 6238 CCTCCTCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 6179 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 6178 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 6119 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | || || | |||||| Sbjct 6118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 6059 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCTCTT 21187 || | || ||||||||||| || | || || ||||| || ||||| |||| | || | Sbjct 6058 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTTGCACCTGTG 5999 Query 21188 ATAAATG 21194 | ||||| Sbjct 5998 AAAAATG 5992 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||||||||| ||||| ||||| | ||||| | | || Sbjct 248 AGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 189 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||| ||||| Sbjct 188 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 129 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | ||| || | |||||| || | ||| |||||| Sbjct 128 TGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 69 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 68 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||| || ||||| ||||| | ||||| || | || Sbjct 6907 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 6848 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 6847 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 6788 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | |||||| |||| ||| |||||| Sbjct 6787 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 6728 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 6727 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6696 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 6664 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 6605 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| |||||| |||| Sbjct 6604 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 6545 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||| || |||| ||| ||||||||||| || | || Sbjct 6544 ACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 6485 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 6484 TTAACGAAGATCTGCAT 6468 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || || ||||| ||||| | ||||| | | || |||||||| ||||| Sbjct 6436 GTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCA 6377 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||||||||| || |||||| || Sbjct 6376 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTA 6317 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | || Sbjct 6316 ACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 6257 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 6256 TTAACGAAGATCTGCAT 6240 >seq33424 Length=445 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||| | ||| | ||||||||||| || ||||||||||| | Sbjct 130 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 189 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| |||||||| || || ||| | || || | ||||||||| || Sbjct 190 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 249 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | | | | |||| ||||||| Sbjct 250 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACC 309 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || ||||| || ||||| Sbjct 310 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 >seq12594 Length=11963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | |||||| | ||| | ||||||||||| || ||||| ||||| | Sbjct 442 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 383 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| |||||||| || || ||| | || || | ||||||||| || Sbjct 382 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 323 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | | | | |||| ||||||| Sbjct 322 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACC 263 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| ||| |||||||| || || Sbjct 262 TCCAGGGTGATGGTCTTTCCAGT 240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || ||||||||||| | ||||| | |||| |||||||| || || ||| | || Sbjct 631 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGATC 572 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 || | ||||||||| || | ||||||||| || |||||| || || | | Sbjct 571 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCA 512 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | | |||| ||||||| |||| ||| |||||||| || || | || || ||||| Sbjct 511 ATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAG 452 Query 21168 ATTTGCAT 21175 || ||||| Sbjct 451 ATCTGCAT 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421908192553496