Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15835 165 8e-36 seq33424 154 2e-32 seq12594 150 2e-31 seq27301 138 1e-27 seq59523 104 2e-17 seq61326 100 3e-16 seq53140 98.7 1e-15 seq25594 91.5 2e-13 seq20785 82.4 8e-11 >seq15835 Length=21870 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| ||| | Sbjct 6696 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 6755 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 6756 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6814 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 6815 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6874 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| |||| |||||||||| Sbjct 6875 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGG 6922 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| ||| | Sbjct 37 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 96 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || || | |||||||| ||||| ||| | || || Sbjct 97 GACACTATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 155 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 156 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 215 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||| |||| || ||||| ||| |||| ||||||| ||| Sbjct 216 CATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 264 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 6468 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 6527 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| || ||||| ||| | || || Sbjct 6528 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6586 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 6587 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6646 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || ||||| || |||| ||||||| ||| Sbjct 6647 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 6695 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| |||||||| | || ||||| | Sbjct 6008 AAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCC 6067 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| || || | ||||| || ||||| ||| | | Sbjct 6068 CAGCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 6126 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 6127 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTCTCTGACT 6186 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || ||||| || |||| |||| || ||| Sbjct 6187 ACAACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGTCTGAGAGGAGGC 6239 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| ||| | Sbjct 6240 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 6299 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || || ||||| ||| | |||||| Sbjct 6300 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 6359 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 6360 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 6419 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || | || || ||||| || |||| ||||||| ||| Sbjct 6420 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 6467 >seq33424 Length=445 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 356 ATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 297 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | ||||| |||||| || || | ||||||||||||||||| | ||||| Sbjct 296 GACAGCATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCA 238 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| ||||||||| |||||| || Sbjct 237 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTATAA 178 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || ||||| ||| | || | || || ||| Sbjct 177 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 129 >seq12594 Length=11963 Score = 150 bits (166), Expect = 2e-31 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40707 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGC 40765 ||| || || || || ||||||||| | || || || ||| |||||| | | ||||| Sbjct 233 AACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGACAGCATTGAAAACG- 291 Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||||||||||||||| | |||||||| || || |||| | Sbjct 292 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTG 351 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || |||||||| |||| ||||||||| |||||||||||||||||||||| ||| Sbjct 352 CTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCA 411 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || ||||| ||| | || | || || ||| Sbjct 412 CCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 443 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || ||||||||| | || || || ||| Sbjct 31 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 90 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||||| |||||| || || | || || ||||||||||| | ||||| Sbjct 91 GACTCAATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 149 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| ||||||||| ||||||||| Sbjct 150 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTACAA 209 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || |||| || || Sbjct 210 CATCCAGAAAGAATCCACCCTCCA 233 Score = 118 bits (130), Expect = 1e-21 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 444 ATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 503 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | ||||| |||||| || || | || || || |||||||| | ||||| Sbjct 504 GACAGCATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 562 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| ||||||||| |||||| || Sbjct 563 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTATAA 622 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 623 CATCCAGAA 631 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || || |||||||| | |||||||| || || |||| || || || |||||||| || Sbjct 634 AAGGAAGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGAT 693 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | ||||||||| |||||||||||||||||||||| |||| || ||||| ||| Sbjct 694 GGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATCTTGTG 747 >seq27301 Length=2015 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || || ||||||||| | || || || || Sbjct 1645 AAAATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCTTGGAGGTGGAGCCC 1704 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||| | || || | || || || |||||||| | ||| Sbjct 1705 AGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 1764 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || |||||||| |||| ||||||||| ||||||| Sbjct 1765 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTAC 1824 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| ||| | || | || || ||| Sbjct 1825 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 1875 >seq59523 Length=898 Score = 104 bits (114), Expect = 2e-17 Identities = 101/126 (80%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||| |||||||||||| | ||||||| | || ||| ||| ||||| | | | Sbjct 369 AGGTGGATCTGTCCAAGGACCTGCAGAACTGGGA-CTCT-GAAGGACGACGAGAGGTACT 426 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| |||||| |||| || || ||||||||||||||||||||||||||||| |||| Sbjct 427 TCATCTCTCACGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTGG 486 Query 116805 TCGAGC 116810 | |||| Sbjct 487 T-GAGC 491 >seq61326 Length=556 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | |||||| |||| ||||| || || || Sbjct 298 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCA 239 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||| |||| ||| Sbjct 238 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTAC 184 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||| ||| ||||| | |||||| |||||| |||| || ||||| |||||||||| Sbjct 549 TGAAGGACGACGAGAGGTTCTTCATCTCTCACGTGTTGGCGTTCTTCGCTGCCAGCGACG 490 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGC 116810 |||||||||||||||| ||||| |||| Sbjct 489 GCATCGTCAACGAGAACCTGGT-GAGC 464 >seq53140 Length=1855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | |||||| |||| ||||| || || || Sbjct 408 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCA 349 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || |||||| |||| ||| Sbjct 348 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTTCTCATCAACACCTAC 294 >seq25594 Length=9440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 116583 TGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC 116642 |||| || || |||||| | ||||| || | |||||||| || ||||||||||| ||| Sbjct 7069 TGCTCCGAGAAAACCCCAGACGGTTTGTCGTCTTCCCCATCCAGTACCCGGACATCTGGA 7010 Query 116643 GCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 | |||||||| |||| |||| || | |||||| || |||||||||| Sbjct 7009 GGATGTACAAGCAGGCACAGGCTTCTTACTGGACGGTGGAGGAGGTGG 6962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || || || || |||||| ||||||| || ||| ||||| Sbjct 4873 GGGGAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 4814 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| |||||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 4813 GCCATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 4754 Query 117152 AT 117153 || Sbjct 4753 AT 4752 >seq20785 Length=69778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||| |||||||| ||||||| || || || |||||||| || | ||| Sbjct 46355 GGTATCCCCCCGGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGACGC 46414 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 46415 ACCCTGTCAGACTACAACATCCAGAAGG 46442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514779936990560