Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq34972 129 5e-25 seq27301 114 1e-20 seq33424 109 5e-19 seq15835 100 2e-16 seq12594 95.1 1e-14 seq8304 84.2 2e-11 >seq34972 Length=31405 Score = 129 bits (142), Expect = 5e-25 Identities = 490/757 (65%), Gaps = 24/757 (3%) Strand=Plus/Minus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | |||||||| |||| ||| || | | | || | Sbjct 3357 CTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGA 3298 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | | ||||| || ||||||||||| || ||||| || || | |||| Sbjct 3297 TGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 3238 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| || || || || || Sbjct 3237 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCA 3178 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || |||| || || | ||| Sbjct 3177 GCAGCTTCCAGTCCAGCAGTTCGGTGG----------GC--TTCT--TC-TCCCACATGT 3133 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | | ||||| || ||||| ||| Sbjct 3132 CGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCT 3073 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAA 133565 ||||||||||||||| ||||||| ||||| ||| |||| || |||| ||| Sbjct 3072 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 3013 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 || || | | | ||| || || | ||| ||| | | | | || | || | || || | Sbjct 3012 TA-TTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCAT 2956 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 | |||||||| || | ||| | || || || | || || ||| | | |||| | Sbjct 2955 CCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTT 2896 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 ||| | ||||||| ||| | ||||||| |||||| | ||| |||||| | ||| | Sbjct 2895 CGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGG 2836 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | ||| | ||||||| ||| || || || |||| || |||||| Sbjct 2835 TCACAGACGCCAGTTTTTTAAAGTCAAAAGTCC--GCTCCGGGGT-GACGTACATGTTGA 2779 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCT 133863 ||||| ||| ||||| || || || ||| | | | | |||| || || | Sbjct 2778 GCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTT 2719 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||||||||||||| | ||||||||||||| ||| | ||| ||||| | |||| Sbjct 2718 CTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 2659 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | || ||||| |||||||| ||| ||| ||||| Sbjct 2658 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 2622 >seq27301 Length=2015 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| || || | Sbjct 1855 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCA 1796 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| |||||||| |||| ||||||||||| || ||||| ||||| ||||| || | Sbjct 1795 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGA 1736 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | ||| | |||||| || ||| ||||| | ||| | || || | Sbjct 1735 TCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTCC 1676 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || ||||| |||||||| Sbjct 1675 CGGTCAGGGTCTTCACAAAGATCTGCAT 1648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| ||||||||||| || ||||| |||||||| ||||| || || Sbjct 2015 CCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCC 1956 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||| | || ||| || ||| ||||| | ||| | || || |||||||| Sbjct 1955 TTGACATTTTCAATGGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGG 1896 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 || || ||||| ||||||||| || Sbjct 1895 GTCTTCACAAAGATCTGCATGCCT 1872 >seq33424 Length=445 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || ||||| || ||| | ||||| || || | Sbjct 149 CAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCTTCCA 208 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| |||||||| |||| ||||||||||| || ||||| |||||||| |||||| | Sbjct 209 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGA 268 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | | |||| || ||| ||||| | ||| | || || | Sbjct 269 TCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTC 328 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | ||||| || || ||||| ||||||||| || Sbjct 329 CAGTCAGGGTCTTCACAAAGATCTGCATGCCT 360 >seq15835 Length=21870 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| |||||||| ||| | ||||| ||| || | Sbjct 244 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCA 185 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | ||||||||| || || ||||| || ||||| | Sbjct 184 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGA 125 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | ||||| || ||||||||||| ||| | || |||| Sbjct 124 TCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGC 65 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || || || || || ||||||||| || Sbjct 64 CAGTGAGGGTCTTAACGAAGATCTGCATGCCT 33 >seq12594 Length=11963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||| || |||||||| ||| | ||||| || || ||||| Sbjct 233 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGC 174 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 |||||||| |||| ||||||||||| || ||||| ||||||||||| || || || Sbjct 173 TTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 114 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||| | | ||| || ||| ||||| | ||| | || || || || Sbjct 113 GCCTTGACGTTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTA 54 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || ||||||||| || Sbjct 53 AGGGTCTTCACGAAGATCTGCATGCCT 27 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| || || | Sbjct 423 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCA 364 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| |||||||| |||| ||||||||||| || ||||| |||||||| |||||| | Sbjct 363 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGA 304 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | | |||| || ||| ||||| | ||| | || || | Sbjct 303 TCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTC 244 Query 118711 CGGTCAGAGTT 118721 | ||||| ||| Sbjct 243 CAGTCAGGGTT 233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 118550 TTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGAT 118609 ||| || ||||| || ||| | ||||| || || ||||| |||||||| |||| Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 118610 GAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTC 118669 ||||||||||| || ||||| ||||| ||||| || || || || || | ||| Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTC 513 Query 118670 GACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | | |||| || ||| ||||| | ||| | || || || ||||| || || ||||| Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 118730 AATCTGCATGGCT 118742 ||||||||| || Sbjct 452 GATCTGCATGCCT 440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | ||||| ||| || | Sbjct 745 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCA 686 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||| |||||||| |||| ||||||||||| || ||||| ||||| ||||| Sbjct 685 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 634 >seq8304 Length=64587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 133851 TACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTG 133910 |||| |||||||| | ||| || |||||| ||||||||||||||| ||| | || ||| Sbjct 6201 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 6260 Query 133911 CTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCG 133961 || | ||||| |||||||| |||||||| ||| |||||||||| Sbjct 6261 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433469773870552