Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq28315 217 1e-51 seq8367 107 1e-18 >seq28315 Length=4498 Score = 217 bits (240), Expect = 1e-51 Identities = 293/404 (73%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||| ||| || || |||||||||||||| |||||| ||||||| ||| Sbjct 751 CCTCTCAGTGAAGAGGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGACAAG 692 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | || || || || || ||||| || || | || |||||||| |||||| | Sbjct 691 ATTGAGATGTTCGAGCGACTTCTACGAGCTGTTTACACTCCGCAGAACATCTACTGTATA 632 Query 107808 CACGTGGATGTGAAGTCCCC-AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || ||||| ||| ||||| | || ||||| | |||| || |||| |||| ||| || Sbjct 631 CATGTGGACCAGAAATCCCCTAAGGAATTTCAGA-AGGCCGTGGAGGCAATTACTTCTTG 573 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| || ||||| || || ||||| | ||| | || || |||||||| ||||| | Sbjct 572 CTTTCCTAATGTGTTTATTGCCAGCAGGTTAGAAAGAGTTGTATATGCCTCATGGTCGCG 513 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA---GTGCCATGGAA 107983 || || || ||| |||| || ||| || || |||| || |||| || | |||| Sbjct 512 GGTTCAGGCAGACTTGAATTGCATGAAAAAC---CTCCTGAACTCACACGTCCAGTGGAG 456 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||| | || || || || ||||||||||||||||| || ||||||| ||||| || | Sbjct 455 GTACCTGCTAAACACCTGTGGGACAGACTTCCCCATCAAAACCAATGGAGAGATTGTTCA 396 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG 108087 ||| || ||| | || || | ||||| |||||| |||||| Sbjct 395 GGCTCTGAAGGCCCTCAACGGGAGAAACAGCATGGAGACTGAGG 352 >seq8367 Length=610 Score = 107 bits (118), Expect = 1e-18 Identities = 237/350 (68%), Gaps = 19/350 (5%) Strand=Plus/Plus Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 || || |||||||| ||||| | ||||| || ||| ||||||| ||| |||| | | Sbjct 7 GTTGTATATGCCTCGTGGTCGCGGGTGCAGGCAGACTTGAACTGCATGATAGACCTAAT- 65 Query 107964 CAGAGCTCA---GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 || |||| || | |||| |||| | || || || |||||||||||||||||||| Sbjct 66 --GAACTCACCCGTCCAGTGGAGGTACCTGCTAAACACCTGCGGGACAGACTTCCCCATC 123 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 || ||||||| ||||| || | |||||| | | | || || | ||||| |||||| Sbjct 124 AAAACCAATGGAGAGATTGTTCAGGCCCTGACGGCCCTAAACGGGAGAAACAGCATGGAG 183 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 |||||| | ||| | ||| | | || ||| | || | || || ||||| || Sbjct 184 ACTGAGGCCACCAATGACTACAAGAGACCCCGTTGGCAGTATCATTACGATGTGACTAAC 243 Query 108141 ACA-CTGTACCCTACCAGCAAGA--TGAAGGACCCTCCCCCTGATAATTTA-----CCCA 108192 ||| |||| | | || ||| ||||| | |||||| | ||| |||| Sbjct 244 ACAGCTGT---CATCAAGACAGATGTGAAGAAAAGTCCCCC--ACCCATTAGCAGCCCCA 298 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACAT 108242 ||||| ||| ||||| || |||||| | | |||||||| | ||||| Sbjct 299 TGTTCCAAGGAAATGCTTACATTGTGGTCACGAGAGCCTTTATGGAACAT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347979297859644