Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq34972 154 3e-32 >seq34972 Length=31405 Score = 154 bits (170), Expect = 3e-32 Identities = 643/1007 (64%), Gaps = 46/1007 (5%) Strand=Plus/Plus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || || ||| |||| ||| | |||||||||||| | |||||| ||||||| || Sbjct 1446 GATGGACGCCAAGAGCGCGTCATGTTCGACAAAATCACCTGTCGCATCCAGAAGCTGTGC 1505 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCC---ATCGCCCAGAAAGTTATTTCG 248553 || || ||| | | ||||||| |||| |||| ||| || ||| || || | Sbjct 1506 TACGGACTGAACTCTGACTTCGTGGATCC---GGCCCAGATCACCATGAAGGTGATCCAG 1562 Query 248554 GGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCG 248613 || | |||| ||| || || || || || ||||| | ||||| |||| | || Sbjct 1563 GGTTTGTACAGCGGCGTCACCACCGTGGAGCTCGACACGCTGGCTGCTGAGATCACCGCC 1622 Query 248614 TACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGG 248673 | | | | |||||||||||| | | || || | ||||||||||||||| Sbjct 1623 ACTCTCACAACTAAGCACCCCGACTACGCCATACTCGCTGCACGGATCGCCGTCTCAAAC 1682 Query 248674 CTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCT--------ACATG 248725 || |||||||| ||||| || |||| ||| |||| ||||| |||| Sbjct 1683 CTGCACAAAGAGACGAAGAAGGTGTTCAGCGACGTGATGGAGGACCTGTACAACTACATC 1742 Query 248726 -----CCTATGGGATGG----TCGCCGATGACGTCCAC----AC------CGTCATTCAG 248766 | || || | ||||| |||| |||| || | || ||| Sbjct 1743 AACCCCTTAAATGACCGCCACTCGCCCATGATCTCCAAGGAGACGCTCGACATCGTTCTC 1802 Query 248767 GACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTC 248826 || ||| ||| ||| || || || | || || |||||| ||| | ||| Sbjct 1803 GAGAACAAAGACCGCCTCAACTCGGCCATCATTTTCGACAGAGATTTCTCCTACAACTTC 1862 Query 248827 TTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAA 248886 || | ||||| || |||||| || || || | || || | ||||| | | || Sbjct 1863 TTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAG 1922 Query 248887 CGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC 248946 ||| ||||||||| | ||| ||||| | |||||||| |||||| ||||| || Sbjct 1923 CGACCGCAGCACATGCTCATGAGAGTGTCCGTCGGGATCCACAAGATGGACATCGACGCA 1982 Query 248947 GTGCTCGAGACGTACACCGGAATG--AGTGAACGCTGGATGACACATGCCACACCGACGC 249004 | | |||||||||| | || || ||| ||| | || || ||| | || |||| Sbjct 1983 GCCATTGAGACGTACAACCTGCTGTCAGAGAAG--TGGTTCACCCACGCCTCCCCCACGC 2040 Query 249005 TCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 |||||||||| || ||| || |||||| | ||||| || || |||||| ||| Sbjct 2041 TCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAG 2100 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124 ||||| |||| |||||||| |||||||| || || || || || |||| | Sbjct 2101 ACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAG 2160 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | || ||||||||| | | | | |||| || | | ||| |||||| || | Sbjct 2161 CCGGGGGAATCGGTGTGGCGATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCA 2220 Query 249185 CAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC-CGCCAGG 249243 | || || | | || |||| ||| | || || ||| | || || || | Sbjct 2221 CCAACGGCAACTCCAACGGGGTCGTCCCCATGCT--GAGAGTTTACAACAACACGGCACG 2278 Query 249244 TT-CATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGT 249298 || | || |||||| | ||| | | || || | || |||||||| |||| | Sbjct 2279 TTACGTCGACCAGGGC-GGCAACAAGAGACCAGGAGCCTTTGCCATGTACCTGGAGCCCT 2337 Query 249299 GGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGA 249358 |||||||||| | || || |||||||| | || ||||||| ||| || ||| || Sbjct 2338 GGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGA 2397 Query 249359 GAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||| | ||||| ||||||||||||||| || ||||| |||||||| Sbjct 2398 GAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATG 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072828046951808