Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq33424 116 3e-21 seq12594 111 1e-19 seq15835 96.9 3e-15 >seq33424 Length=445 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||| |||||| || ||| |||| |||| Sbjct 149 CAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCTTCCA 208 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| || || |||| ||||| ||||| ||||| | ||||| ||||| | Sbjct 209 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGA 268 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | |||||| | ||||||||||| ||| || ||||| | Sbjct 269 TCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTC 328 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 329 CAGTCAGGGTCTTCACAAAGATCTGCATG 357 >seq12594 Length=11963 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| ||||| |||||| || |||| |||| ||||| || ||||| || || ||| Sbjct 631 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGATC 572 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | ||||| ||||| ||||| | || ||||| ||| || || ||| || | Sbjct 571 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCA 512 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | |||||| | ||||||||||| ||| || ||||| || ||||| |||||||||||| Sbjct 511 ATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAG 452 Query 45329 ATTTGCATG 45337 || |||||| Sbjct 451 ATCTGCATG 443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| |||| |||| Sbjct 423 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCA 364 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| || || |||| ||||| ||||| ||||| | ||||| ||||| | Sbjct 363 GCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGA 304 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | |||||| | ||||||||||| ||| || ||||| | Sbjct 303 TCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTC 244 Query 45309 CCGTCAGAGT 45318 | ||||| || Sbjct 243 CAGTCAGGGT 234 >seq15835 Length=21870 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| ||||||||||| || ||| | || ||||| || Sbjct 6214 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 6155 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| || ||| ||||| || || | || ||||||||| || || Sbjct 6154 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 6095 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||| | || || |||||||| || Sbjct 6094 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTG 6035 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || |||||||||||||| |||||||| Sbjct 6034 AGGGTCTTCACAAAGATCTGCATGTT 6009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| |||||||||||| || |||| | || ||||| || || || || || Sbjct 6430 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 6371 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | || ||||| ||| || || |||||| | Sbjct 6370 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTC 6311 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| || || ||||| || Sbjct 6310 TCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 6251 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 6250 AAGATCTGCATG 6239 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || |||| Sbjct 6903 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 6844 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 6843 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 6784 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| ||| || ||||||| Sbjct 6783 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGC 6724 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || ||||| || ||||| |||||| Sbjct 6723 CAGTGAGGGTCTTAACGAAGATCTGCATG 6695 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| | || ||||| || || || || || Sbjct 6659 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 6600 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| || || || || | || ||||||||| || || || || Sbjct 6599 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 6540 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || ||||||| ||| || |||||||| || || ||||| || Sbjct 6539 CTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAAC 6480 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 6479 GAAGATCTGCATG 6467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394746789542326