Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22]
68,206 sequences; 756,296,653 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq15835 87.8 1e-12
>seq15835
Length=21870
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || |||||||| || ||||||||||||| | || || |||||||| ||
Sbjct 6442 TGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGC 6383
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| || || || || || ||| | |||||||||||| || |
Sbjct 6382 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTG 6323
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||| | ||||||| || | ||||||| | ||||| ||
Sbjct 6322 GCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTG 6263
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || || || || || |||||
Sbjct 6262 AGGGTCTTAACGAAGATCTGCAT 6240
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||||| || | || || | || || || || || ||||| |||||||||||||
Sbjct 263 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 204
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || |||||||| || ||||| ||| |||| || || || ||||| |||
Sbjct 203 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 144
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| || || || | | || || || | ||| |||||| | |||||||
Sbjct 143 ATGCCTTCTTTGTCCTGGATCT-TGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGAC 85
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | ||||| || | || || || || || |||||
Sbjct 84 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379028666269470
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |