Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq34972 479 3e-130 seq8304 123 2e-23 seq15835 100 3e-16 seq27301 93.3 4e-14 seq12594 91.5 1e-13 seq33424 87.8 2e-12 >seq34972 Length=31405 Score = 479 bits (530), Expect = 3e-130 Identities = 1040/1544 (67%), Gaps = 39/1544 (3%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||||||| |||| || | |||||| Sbjct 3385 TCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAAC 3326 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 3325 TCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 3266 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 3265 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 3206 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| | | || || ||| |||| | ||||||| ||| |||| ||| || Sbjct 3205 ACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTC 3146 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| |||| | ||| || | || |||| ||||||| Sbjct 3145 ---TTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTC 3089 Query 22709 TCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | ||| |||| || |||||||||||||||| ||| ||| || || Sbjct 3088 TCGTAGGGGCCG-AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGAT 3030 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTTCGTACGGCATA 22822 | ||||||||||| | |||| || || | | | ||||||| |||| | Sbjct 3029 GGCCTCGAAGATTTGAAT-----ATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAA 2975 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | ||| || ||||||| ||| || ||||| || || ||||| | || | Sbjct 2974 CGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGC 2915 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 || ||| || || ||||||| ||||| | || ||||| ||||||| Sbjct 2914 TTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAA 2855 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--T 23000 || || | | ||| || | | |||||| ||| | ||| | Sbjct 2854 TTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTC--AAAAGTCCGCTCCG 2797 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 | || || |||||| || || ||||| |||||||| || || ||||| || | | Sbjct 2796 GGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGC 2737 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||| | |||||| || || || ||||| |||| || ||||||| ||| | Sbjct 2736 TGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTT 2677 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||||| || | ||||| | || ||||| |||||||| |||||||| || || || Sbjct 2676 GGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCT 2617 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCT 23239 | |||||||| | || |||||| ||||| | | | |||| ||| | || | || Sbjct 2616 GGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACG-CGCTTGAACTTCCCC 2558 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 | | ||| || ||| | | || || || | || | || || |||| || Sbjct 2557 TGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCT 2498 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| ||| ||| || | || || | |||| || Sbjct 2497 GGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAAC 2438 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || ||||| || ||||||| || || | ||| | | |||||| || |||||| Sbjct 2437 AGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG 2378 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| || | |||| ||||| |||||||| || ||||| ||||| ||||| | |||| Sbjct 2377 TTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCA 2318 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||||| ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 2317 AAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACT 2258 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCT 23596 || ||||| || |||| |||||||| |||| ||| || | ||| || Sbjct 2257 CTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCC 2201 Query 23597 TTTGCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 ||| || | | | | | || | ||| || || ||| | ||||| || || | || Sbjct 2200 GTTGTTCTGATGCAGCTTATCG-CCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGC 2142 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 |||||| ||||| |||||||| ||||| ||||||||||| ||||| | |||| || ||| Sbjct 2141 GCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAA 2082 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || |||| || | || || | || ||| || || ||| |||||| || Sbjct 2081 GCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGT 2022 Query 23776 AAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCT 23830 || ||| ||| |||| || |||||||| || ||||| || || |||||| ||| Sbjct 2021 GAA----CCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCT 1966 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 ||| || |||| || || | ||| | ||||| || |||| |||| || |||| Sbjct 1965 -TGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 1907 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || || || ||||| || || || | || || || || || || Sbjct 1906 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAA 1863 >seq8304 Length=64587 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| || || || || |||||||| | || || || Sbjct 6182 CACCTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 6241 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 6242 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 6301 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || ||| |||||| |||||||| || ||||| Sbjct 6302 GCCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACA 6339 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| | ||||| || | ||| | Sbjct 6711 TTTCCACTCGTTTCATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCC 6770 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 ||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 6771 TGTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCC 6830 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 6831 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 6866 >seq15835 Length=21870 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || |||||||| Sbjct 6467 CATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAG 6526 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || ||| | || ||||||||||||| | || || || || Sbjct 6527 CGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6586 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | ||| || || Sbjct 6587 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6646 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | |||||||| || Sbjct 6647 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 6694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 6695 CATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 6754 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||||||| | || || || || Sbjct 6755 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6814 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | ||| || || Sbjct 6815 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6874 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || ||||| || || | |||||||||||| Sbjct 6875 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGGT 6923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || ||||| | || || || | Sbjct 6007 CAAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGC 6066 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | || || | || ||||||||||||| | || || | Sbjct 6067 CCAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 6126 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 |||||||| | || || || |||||||| ||| ||||||| | | | || | || Sbjct 6127 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTCTCTGAC 6185 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| ||||| || || | ||||| || || Sbjct 6186 TACAACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGTCTGAGAGGAGG 6238 >seq27301 Length=2015 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || || ||||| ||||| || || || |||||| | || || || Sbjct 1643 TCAAA-ATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCTTGGAGGTGGAG 1701 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | |||| |||||| | || ||| ||||||||| | || || Sbjct 1702 CCCAGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCA 1761 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 |||||||||||||| || || ||||| || ||| |||||||| || | ||| Sbjct 1762 GACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGAC 1821 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || || || ||||| || || Sbjct 1822 TACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCT 1859 >seq12594 Length=11963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 443 CATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 502 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| ||||| | || ||| ||||||||| | || || ||||| Sbjct 503 TGACAGCATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 562 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| |||||||| | || | ||| ||||| Sbjct 563 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTATAA 622 Query 31372 CATTCAAAAAGAA 31384 ||| || ||| || Sbjct 623 CATCCAGAAATAA 635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || || Sbjct 30 CATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 89 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| ||||| | || ||| ||||| ||| | || || ||||| Sbjct 90 TGACTCAATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 149 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| |||||||| | || | ||| || || Sbjct 150 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTACAA 209 Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395 ||| || |||||||| || || || Sbjct 210 CATCCAGAAAGAATCCACCCTCCA 233 >seq33424 Length=445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 357 CATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 298 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| ||||| | || ||||| || ||| | || || ||||| Sbjct 297 TGACAGCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCA 238 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| |||||||| || | ||| ||||| Sbjct 237 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTATAA 178 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || ||||| || || Sbjct 177 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445386350711520