Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq34972 459 3e-124 >seq34972 Length=31405 Score = 459 bits (508), Expect = 3e-124 Identities = 1274/1942 (66%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | |||||| || | || | || ||||| ||||| Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | ||| || || || || | | ||| | | || Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 3158 Query 62565 TCCGACGG-TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCC 62623 || | || | | | || || || || || || ||| || || || Sbjct 3157 TCGGTGGGCTTCTTCTCCCACATGTCG-TACTGCAGGATGCCCTTGCTGACGGGAGAGCC 3099 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | | || || || || || || || | || || | || |||||||| | || | Sbjct 3098 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 3039 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 || || |||| || ||||| | |||| || || || || ||| || || || Sbjct 3038 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2979 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 ||| | ||| || || || ||||| || ||||| || ||||| || || || || || Sbjct 2978 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2919 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | ||| || || |||| ||||| || | ||||| || ||||| || || | || || Sbjct 2918 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTT 2859 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 | ||| |||| ||||||||| |||| | |||||| ||| ||||| || || Sbjct 2858 CAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2799 Query 62924 TA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TA 62978 | || ||||||| | |||| || |||||||| ||||| |||||||||| | Sbjct 2798 CGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTG 2739 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 || | || | || || || ||||| || || || ||||||| || || | ||| Sbjct 2738 GCTGGTG--TACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 2681 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 ||||| || ||||| |||| || || || || || || ||| |||| || |||||||| Sbjct 2680 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCT 2621 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT 63157 |||| || || |||| || | ||| | | || ||||||| | | ||| | | Sbjct 2620 GTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAACTT 2562 Query 63158 CCTTTCTCTTTCGTATAGA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 || || ||| |||| || || | ||||||||| || ||||| | ||| Sbjct 2561 CCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCC 2504 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | || || || | |||||||||| ||||| || ||| || ||||| ||| Sbjct 2503 AGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 2444 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 || || || || || ||||| || | || ||| || || || | ||| || ||||| || Sbjct 2443 ATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTT 2385 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 ||| || ||||| || || || ||||| | | | || | ||||| || |||| ||| Sbjct 2384 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 2325 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||||| | |||| || | ||||| || ||||| || | ||| | || ||||| || Sbjct 2324 CATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTT 2265 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 |||||||||| ||| || | | ||||| || | || ||||| |||| ||| |||| Sbjct 2264 GTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 2205 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || | | | || || || | | ||| |||||||| || ||| ||||| | Sbjct 2204 CCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAG 2145 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 |||||| | || | |||||| || |||||||| ||||| || || ||||| || || Sbjct 2144 GGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 2085 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 || ||||| |||| || | | | ||||| || || || | || || || ||||| Sbjct 2084 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTG 2025 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || ||||| || || || || || |||||||||||||| |||| ||| || ||| | Sbjct 2024 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTT 1965 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || || | || | ||| | ||||||||| |||| || | | |||| ||| Sbjct 1964 GTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT 1905 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 || ||||||| |||||| |||| ||| || || || || ||||||| || || || Sbjct 1904 GATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 1845 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGT 63934 || ||| |||| || |||| ||||| || || | | | ||| || || | || Sbjct 1844 TCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT 1785 Query 63935 AATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 63993 | ||| || || || || || || ||||| || || | |||||| | | | Sbjct 1784 -CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAGGT 1726 Query 63994 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053 |||||||||| || || || | || || || || ||||| || ||||| | ||| || | Sbjct 1725 CCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCC 1666 Query 64054 TGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 64113 || || || ||||| || || || || | || || |||||| | || || || | Sbjct 1665 GTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGCAG 1606 Query 64114 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 |||| ||||| | || || || || || || | || | || || || |||||||| | Sbjct 1605 CCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCATGG 1546 Query 64174 CTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAG 64233 || | ||||| | || | ||| | || ||||||| || || ||| Sbjct 1545 TGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCGAC 1486 Query 64234 ACGTGATTTTATCAAACATGAC 64255 | |||||||| || |||||||| Sbjct 1485 AGGTGATTTTGTCGAACATGAC 1464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629280633259680