Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq34972 140 3e-28 >seq34972 Length=31405 Score = 140 bits (154), Expect = 3e-28 Identities = 854/1354 (63%), Gaps = 21/1354 (2%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || || || || | |||||| ||||| || | || || | || || || ||||| Sbjct 3349 AGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTG 3290 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || || | | || || | || || || || ||||| Sbjct 3289 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 3230 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || ||| Sbjct 3229 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTC 3170 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || ||||| |||||| || || || || || || || || Sbjct 3169 CAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTG 3110 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | ||||| | || ||||| || || ||| || || ||||| || | Sbjct 3109 ACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCC 3050 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| | || || | ||||| ||||| ||||| | | | || |||| | Sbjct 3049 TCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTG 2990 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | || | || | || || |||| |||||||| || || || || || Sbjct 2989 CTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCA 2930 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | || ||| ||||||||| || || || || Sbjct 2929 ATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCG 2870 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA---C 37659 || | || || | ||| || || | || ||| || | | | | | || | || | Sbjct 2869 ATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCAC-AGACGCCAGTTTTTTAAAGTC 2811 Query 37660 ATAAATACGTTATTAT-TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | || | | || | | | | || ||| || | ||||| || || || Sbjct 2810 AAAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGC 2751 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 || ||||| | | | | | | ||||| ||||| ||||| || || || | || || Sbjct 2750 TACCTCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGT 2691 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 |||| ||| ||| ||| || | || || | ||||| || || || || ||||| Sbjct 2690 GCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGT 2631 Query 37839 TCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGAT-C 37896 || |||| | || | |||||||| | | ||| || || || || || || | | Sbjct 2630 GCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA-CTGCTGAGCCTTCACCACGC 2572 Query 37897 GCTTTAAtttttttCTTTGTTTCGTATTCTA--TATATAATTTGTTAAAATCATTCCCCC 37954 |||| || || | || ||| || | | || | || | || || | ||||| Sbjct 2571 GCTTGAACTTC---CCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCC 2515 Query 37955 ATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTT 38012 | || | ||| | ||||| || ||| |||||||| |||||||| || || | | Sbjct 2514 AG-CA-CTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCT 2457 Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTC 38071 || || | | ||| || | || || | ||| | || ||| | || || ||| || Sbjct 2456 CTCCACTCTCTTCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTC 2398 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGC 38130 | | || || || || ||||| ||| |||| || || || || | || |||||| Sbjct 2397 TCTGCTCCTCCTTTCCGGTGTTCTT-CTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGC 2339 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 || || || | || || | | ||||||||||| || | || ||||| | | || Sbjct 2338 CAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAA 2279 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 | | ||||| || || | ||| | ||| || || | || || || |||||||| | Sbjct 2278 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTG 2219 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCA 38310 |||| || || | ||| | | || || ||||||| || || ||||| || || Sbjct 2218 CCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCT 2159 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC 38370 ||| || || | |||||||| || | ||| || | || ||||| || ||||| || Sbjct 2158 GATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCT 2099 Query 38371 TTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAAT 38430 || || | || | || || || |||| || ||| ||||| ||||| || | Sbjct 2098 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGC 2039 Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 || || || || || ||||||| || || |||| Sbjct 2038 GTGGGGGAGGCGTGGGTGAACCACTTCTCTGACA 2005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468125347468640